RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 NEGR1Q7Z3B1 354 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 ZNF679Q8IYX0 411 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 STEAP2Q8NFT2 490 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 OR2T3Q8NH03 318 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 SYNPRQ8TBG9 265 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 EMG1Q92979 244 aaKnown RBP1.86□□□□□ -2.11
VPS13C-207ENST00000558919 TTC25Q96NG3 672 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 WFIKKN1Q96NZ8 548 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 TSSK3Q96PN8 268 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 SECISBP2Q96T21 854 aaKnown RBP1.86□□□□□ -2.11
VPS13C-207ENST00000558919 ZSCAN5AQ9BUG6 496 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 NT5C3AQ9H0P0 336 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 RAB18Q9NP72 206 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 SMOXQ9NWM0 555 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 PACSIN2Q9UNF0 486 aaPredicted RBP1.86□□□□□ -2.11
VPS13C-207ENST00000558919 RFNGQ9Y644 331 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 ATP10AO60312 1499 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 GPR179Q6PRD1 2367 aa1.86□□□□□ -2.11
VPS13C-207ENST00000558919 HIVEP2P31629 2446 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 C7orf66A4D0T2 115 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 SCGNO76038 276 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 VAMP5O95183 116 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 GLRA2P23416 452 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 CCR1P32246 355 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 NPBWR2P48146 333 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 HNMTP50135 292 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 GBX2P52951 348 aaPredicted RBP1.85□□□□□ -2.11
VPS13C-207ENST00000558919 KLHL38Q2WGJ6 581 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 COX19Q49B96 90 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 CCDC152Q4G0S7 254 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 LRRC23Q53EV4 343 aaPredicted RBP1.85□□□□□ -2.11
VPS13C-207ENST00000558919 SFT2D3Q587I9 215 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 OR52M1Q8NGK5 317 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 ZNF461Q8TAF7 563 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 PYROXD1Q8WU10 500 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 GEMIN6Q8WXD5 167 aaKnown RBP1.85□□□□□ -2.11
VPS13C-207ENST00000558919 RMI2Q96E14 147 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 YY1AP1Q9H869 796 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 ZNF355PQ9NSJ1 428 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 BFARQ9NZS9 450 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 EXTL2Q9UBQ6 330 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 KCNIP3Q9Y2W7 256 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 COL27A1Q8IZC6 1860 aaPredicted RBP1.85□□□□□ -2.11
VPS13C-207ENST00000558919 CEMIPQ8WUJ3 1361 aa1.85□□□□□ -2.11
VPS13C-207ENST00000558919 ATAD2BQ9ULI0 1458 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 C15orf38-AP3S2A0A0A6YYH1 394 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 A0A1B0GVI7 797 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 METTL21EPA6NDL7 271 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 GPR89AB7ZAQ6 455 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 ARPC3O15145 178 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 MGRN1O60291 552 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 GPR89BP0CG08 455 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 TCN1P20061 433 aaPredicted RBP1.84□□□□□ -2.11
VPS13C-207ENST00000558919 GPR6P46095 362 aaPredicted RBP1.84□□□□□ -2.11
VPS13C-207ENST00000558919 CYB561P49447 251 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 DUSP3P51452 185 aaPredicted RBP1.84□□□□□ -2.11
VPS13C-207ENST00000558919 ARFIP1P53367 373 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 SUB1P53999 127 aaKnown RBP eCLIP1.84□□□□□ -2.11
VPS13C-207ENST00000558919 GPM6BQ13491 265 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 PDK3Q15120 406 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 FILIP1LQ4L180 1135 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 VAX1Q5SQQ9 334 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 PRR9Q5T870 116 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 CNIH2Q6PI25 160 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 STRADAQ7RTN6 431 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 BHLHA15Q7RTS1 189 aaPredicted RBP1.84□□□□□ -2.11
VPS13C-207ENST00000558919 PEX26Q7Z412 305 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 BIVMQ86UB2 503 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 ECHDC2Q86YB7 292 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 NUDCD3Q8IVD9 361 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 TBC1D21Q8IYX1 336 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 MREGQ8N565 214 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 MAGEE2Q8TD90 523 aaPredicted RBP1.84□□□□□ -2.11
VPS13C-207ENST00000558919 PDXPQ96GD0 296 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 OR10C1Q96KK4 312 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 CHAC1Q9BUX1 264 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 OSBPL10Q9BXB5 764 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 GABARAPL3Q9BY60 117 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 UGT1A7Q9HAW7 530 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 UGT1A10Q9HAW8 530 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 UGT1A8Q9HAW9 530 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 ZNRD1Q9P1U0 126 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 N6AMT1Q9Y5N5 214 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 TMEM14AQ9Y6G1 99 aa1.84□□□□□ -2.11
VPS13C-207ENST00000558919 IGLV3-22A0A075B6J6 115 aa1.83□□□□□ -2.12
VPS13C-207ENST00000558919 IGKV1D-13A0A0B4J2D9 117 aa1.83□□□□□ -2.12
VPS13C-207ENST00000558919 SNNO75324 88 aaPredicted RBP1.83□□□□□ -2.12
VPS13C-207ENST00000558919 SRP72O76094 671 aaKnown RBP1.83□□□□□ -2.12
VPS13C-207ENST00000558919 GAPDHP04406 335 aaKnown RBP1.83□□□□□ -2.12
VPS13C-207ENST00000558919 FGF1P05230 155 aa1.83□□□□□ -2.12
VPS13C-207ENST00000558919 IGHV1-8P0DP01 117 aa1.83□□□□□ -2.12
VPS13C-207ENST00000558919 IGKV1-13P0DP09 117 aa1.83□□□□□ -2.12
VPS13C-207ENST00000558919 GRIA1P42261 906 aa1.83□□□□□ -2.12
VPS13C-207ENST00000558919 CCR8P51685 355 aa1.83□□□□□ -2.12
VPS13C-207ENST00000558919 NCBP2P52298 156 aaKnown RBP eCLIP1.83□□□□□ -2.12
VPS13C-207ENST00000558919 ESRRGP62508 458 aa1.83□□□□□ -2.12
VPS13C-207ENST00000558919 RAP1AP62834 184 aa1.83□□□□□ -2.12
VPS13C-207ENST00000558919 RPS21P63220 83 aaKnown RBP1.83□□□□□ -2.12
VPS13C-207ENST00000558919 SLC7A9P82251 487 aa1.83□□□□□ -2.12
VPS13C-207ENST00000558919 CHIT1Q13231 466 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms