RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 DND1Q8IYX4 353 aaKnown RBP10.34□□□□□ -0.75
LDLR-208ENST00000558518 INO80EQ8NBZ0 244 aaPredicted RBP10.34□□□□□ -0.75
LDLR-208ENST00000558518 RGP1Q92546 391 aaPredicted RBP10.34□□□□□ -0.75
LDLR-208ENST00000558518 PNPLA2Q96AD5 504 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 SPACA7Q96KW9 195 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 ZCCHC4Q9H5U6 513 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 GSKIPQ9P0R6 139 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 FAM186AA6NE01 2351 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 TMEM272A0A1B0GTI8 110 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 TMEM235A6NFC5 223 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 A8MXK9 166 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 DCTN6O00399 190 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 FGF2P09038 288 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 AKAIN1P0CW23 69 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 BDKRB2P30411 391 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 GRK6P43250 576 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 LSSP48449 732 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 PPP2CBP62714 309 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 PPP2CAP67775 309 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 BIKQ13323 160 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 H3F3CQ6NXT2 135 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 BAIAP2L2Q6UXY1 529 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 OR2W3Q7Z3T1 314 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 PRR22Q8IZ63 422 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 GTPBP8Q8N3Z3 284 aaPredicted RBP10.34□□□□□ -0.75
LDLR-208ENST00000558518 ZSCAN1Q8NBB4 408 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 FGF13Q92913 245 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 RERGQ96A58 199 aaPredicted RBP10.34□□□□□ -0.75
LDLR-208ENST00000558518 CMBLQ96DG6 245 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 MYADMQ96S97 322 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 FREM3P0C091 2139 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 TRAV20A0A0B4J274 112 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 EDDM13A0A1B0GTR0 161 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 SGCEO43556 437 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 RDH16O75452 317 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 ADH1CP00326 375 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 OR4E1P0C645 316 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 HSD17B2P37059 387 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 PRKXP51817 358 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 CXADRP78310 365 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 DUSP8Q13202 625 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 ENPP2Q13822 863 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 ARHGAP11BQ3KRB8 267 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 OR52W1Q6IF63 320 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 OVCH2Q7RTZ1 564 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 GALNT16Q8N428 558 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 ZNF563Q8TA94 476 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 PHOSPHO1Q8TCT1 267 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 PPP1R1CQ8WVI7 109 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 HAVCR1Q96D42 359 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 PELOQ9BRX2 385 aaKnown RBP10.34□□□□□ -0.75
LDLR-208ENST00000558518 SYT4Q9H2B2 425 aa10.34□□□□□ -0.75
LDLR-208ENST00000558518 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.34□□□□□ -0.75
LDLR-208ENST00000558518 AKR7A3O95154 331 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 CYB5AP00167 134 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 S100A6P06703 90 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 GNALP38405 381 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 CDKN2AP42771 156 aaKnown RBP10.33□□□□□ -0.76
LDLR-208ENST00000558518 TRA2BP62995 288 aaKnown RBP10.33□□□□□ -0.76
LDLR-208ENST00000558518 MLC1Q15049 377 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 Q499Y3 187 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 PUSL1Q8N0Z8 303 aaKnown RBP10.33□□□□□ -0.76
LDLR-208ENST00000558518 BPIFB2Q8N4F0 458 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 NR4A3Q92570 626 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 DNTTIP1Q9H147 329 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 APMAPQ9HDC9 416 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 EXOSC3Q9NQT5 275 aaKnown RBP10.33□□□□□ -0.76
LDLR-208ENST00000558518 ANKRD10Q9NXR5 420 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 LRIT1Q9P2V4 623 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 GLS2Q9UI32 602 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 SPACA6W5XKT8 324 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 OR2M5A3KFT3 312 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 CTSVO60911 334 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 PEBP1P30086 187 aaKnown RBP10.33□□□□□ -0.76
LDLR-208ENST00000558518 ARFIP1P53367 373 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 RAG2P55895 527 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 GPR85P60893 370 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 ZNHIT3Q15649 155 aaPredicted RBP10.33□□□□□ -0.76
LDLR-208ENST00000558518 MDGA2Q7Z553 956 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 VN1R4Q7Z5H5 301 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 COMMD2Q86X83 199 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 SPAG16Q8N0X2 631 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 KDM8Q8N371 416 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 OR10Z1Q8NGY1 313 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 MRPL48Q96GC5 212 aaKnown RBP10.33□□□□□ -0.76
LDLR-208ENST00000558518 RBM18Q96H35 190 aaKnown RBP10.33□□□□□ -0.76
LDLR-208ENST00000558518 TRIM2Q9C040 744 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 TBC1D29Q9UFV1 150 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 CABIN1Q9Y6J0 2220 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 CDC14CA4D256 554 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 C17orf51A8MQB3 221 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 METTL12A8MUP2 240 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 B3GALNT1O75752 331 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 GALP22466 123 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 MST1P26927 711 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 CTNNB1P35222 781 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 SRSF3P84103 164 aaKnown RBP10.33□□□□□ -0.76
LDLR-208ENST00000558518 POU4F2Q12837 409 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 MEP1BQ16820 701 aa10.33□□□□□ -0.76
LDLR-208ENST00000558518 GFOD2Q3B7J2 385 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms