RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 AKAP14Q86UN6 197 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 PTOV1Q86YD1 416 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 MICU2Q8IYU8 434 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 CDK20Q8IZL9 346 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 LRRC75A-AS1Q8N1F1 130 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 TMEM99Q8N816 258 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 NANOS1Q8WY41 292 aaKnown RBP7.66□□□□□ -1.18
USP3-208ENST00000558285 PLPPR2Q96GM1 343 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 KLHDC3Q9BQ90 382 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 AIFM2Q9BRQ8 373 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 IKZF5Q9H5V7 419 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 UBTD1Q9HAC8 227 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 SPAG4Q9NPE6 437 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 MRPL39Q9NYK5 338 aaKnown RBP7.66□□□□□ -1.18
USP3-208ENST00000558285 POU2F3Q9UKI9 436 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 FBXL3Q9UKT7 428 aa7.66□□□□□ -1.18
USP3-208ENST00000558285 MED12Q93074 2177 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 ADAM11O75078 769 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 NPIPB7O75200 414 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 LYZL6O75951 148 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 OR5F1O95221 314 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 IFNW1P05000 195 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 CCKARP32238 428 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 RIPPLY1Q0D2K3 151 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 ST3GAL3Q11203 375 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 BNIP2Q12982 314 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 NRF1Q16656 503 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 SPATS1Q496A3 300 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 ENTPD8Q5MY95 495 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 NIPAL3Q6P499 406 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 USP43Q70EL4 1123 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 RRM2BQ7LG56 351 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 MED12LQ86YW9 2145 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 CCDC103Q8IW40 242 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 PGAM4Q8N0Y7 254 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 VANGL1Q8TAA9 524 aaPredicted RBP7.65□□□□□ -1.18
USP3-208ENST00000558285 FBXW5Q969U6 566 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 CCDC124Q96CT7 223 aaKnown RBP7.65□□□□□ -1.18
USP3-208ENST00000558285 RCN3Q96D15 328 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 TRMT61AQ96FX7 289 aaKnown RBP7.65□□□□□ -1.18
USP3-208ENST00000558285 ADAD1Q96M93 576 aaKnown RBP7.65□□□□□ -1.18
USP3-208ENST00000558285 KCTD14Q9BQ13 255 aaPredicted RBP7.65□□□□□ -1.18
USP3-208ENST00000558285 DCUN1D5Q9BTE7 237 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 LINC00470Q9BZP3 86 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 NANSQ9NR45 359 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 ZMAT5Q9UDW3 170 aaKnown RBP7.65□□□□□ -1.18
USP3-208ENST00000558285 PRSS50Q9UI38 385 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 PLEKHA6Q9Y2H5 1048 aa7.65□□□□□ -1.18
USP3-208ENST00000558285 SPENQ96T58 3664 aaKnown RBP7.65□□□□□ -1.18
USP3-208ENST00000558285 A0A1W2PPW3 197 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 ZC3H12DA2A288 527 aaKnown RBP7.64□□□□□ -1.19
USP3-208ENST00000558285 FAM171A2A8MVW0 826 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 DEFB108AA8MXU0 73 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 ZNF814B7Z6K7 855 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 RAD51DO75771 328 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 IGF2P01344 180 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 C1QCP02747 245 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 UMPSP11172 480 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 GRPRP30550 384 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 KDELR2P33947 212 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 IST1P53990 364 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 CDH12P55289 794 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 KRTAP10-9P60411 292 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 HOXC5Q00444 222 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 IFITM2Q01629 132 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 PUDPQ08623 228 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 TRAP1Q12931 704 aaKnown RBP7.64□□□□□ -1.19
USP3-208ENST00000558285 TAB1Q15750 504 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 ETFDHQ16134 617 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 RABL3Q5HYI8 236 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 ADAM5Q6NVV9 412 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 DEF8Q6ZN54 512 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 PLEKHG7Q6ZR37 379 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 CREB3L2Q70SY1 520 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 FKBP9P1Q75LS8 142 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 PXKQ7Z7A4 578 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 CALHM3Q86XJ0 350 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 ZNF433Q8N7K0 673 aaPredicted RBP7.64□□□□□ -1.19
USP3-208ENST00000558285 ZNF611Q8N823 705 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 OR5J2Q8NH18 312 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 GEMIN6Q8WXD5 167 aaKnown RBP7.64□□□□□ -1.19
USP3-208ENST00000558285 TFAP2CQ92754 450 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 FAM162AQ96A26 154 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 TPD52L3Q96J77 140 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 PKP2Q99959 881 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 PCDHAC1Q9H158 963 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 PLEKHF2Q9H8W4 249 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 CCM2LQ9NUG4 571 aaPredicted RBP7.64□□□□□ -1.19
USP3-208ENST00000558285 ZNF229Q9UJW7 825 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 SAMD4AQ9UPU9 718 aaKnown RBP7.64□□□□□ -1.19
USP3-208ENST00000558285 MED31Q9Y3C7 131 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 PCDHGB5Q9Y5G0 923 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 MYO9AB2RTY4 2548 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 CENPEQ02224 2701 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 A0A1W2PRG6 482 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 CPSF4LA6NMK7 179 aaKnown RBP7.64□□□□□ -1.19
USP3-208ENST00000558285 M0R082 166 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 M0R3H8 397 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 HS3ST1O14792 307 aa7.64□□□□□ -1.19
USP3-208ENST00000558285 TPST1O60507 370 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms