RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 H0YC42 278 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 CDC40O60508 579 aaKnown RBP eCLIP10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 SRPX2O60687 465 aaPredicted RBP10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 PMS2P2O95744 297 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 APEHP13798 732 aaKnown RBP10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 AGTR1P30556 359 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 ACTR1BP42025 376 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 EFNB2P52799 333 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 RAB38P57729 211 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 ACTR1AP61163 376 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 ZNF169Q14929 603 aaPredicted RBP10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 NKAIN2Q5VXU1 208 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 STEAP1BQ6NZ63 245 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 ENPP7Q6UWV6 458 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 C10orf53Q8N6V4 93 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 RELL2Q8NC24 303 aaPredicted RBP10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 LSM14AQ8ND56 463 aaKnown RBP10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 OR10Z1Q8NGY1 313 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 DUSP19Q8WTR2 217 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 OR1E3Q8WZA6 343 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 ST8SIA2Q92186 375 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 TRIM43Q96BQ3 446 aaPredicted RBP10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 ZNF416Q9BWM5 594 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 SRA1Q9HD15 236 aaKnown RBP10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 PCDHB16Q9NRJ7 776 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 A0A0D9SG52 128 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 MEIS3P1A6NDR6 274 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 ELOA3DA6NLF2 546 aaPredicted RBP10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 C4orf47A7E2U8 309 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 H3BUI4 141 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 PLRG1O43660 514 aaKnown RBP10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 NDUFA2O43678 99 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 CD3DP04234 171 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 PRKACAP17612 351 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 RAB3AP20336 220 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 S1PR1P21453 382 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 POU3F4P49335 361 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 CTXN1P60606 82 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 RASGEF1BQ0VAM2 473 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 RUNX3Q13761 415 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 ELOA3BQ3SY89 546 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 MANEAQ5SRI9 462 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 ATRAIDQ6UW56 229 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 MCATQ8IVS2 390 aaKnown RBP10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 C12orf45Q8N5I9 185 aaPredicted RBP10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 ELOA3Q8NG57 546 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 OR10K1Q8NGX5 313 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 OR8S1Q8NH09 359 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 THRSPQ92748 146 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 MNTQ99583 582 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 CHST6Q9GZX3 395 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 C1orf198Q9H425 327 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 POFUT1Q9H488 388 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 Q9N2J8 555 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 PCOLCE2Q9UKZ9 415 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 PLCL2Q9UPR0 1127 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 HIF3AQ9Y2N7 669 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 NUP210LQ5VU65 1888 aa10.74□□□□□ -0.69
VIPAS39-211ENST00000557658 TBC1D3DA0A087WVF3 549 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 SERINC4A6NH21 518 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 TVP23AA6NH52 213 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 TBC1D3LB9A6J9 549 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 APODP05090 189 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 ITGB2P05107 769 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 TBC1D3HP0C7X1 549 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 PVRP15151 417 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 SDHAP31040 664 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 ADPRHP54922 357 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 ACTBP60709 375 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 ACTG1P63261 375 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 ITPRIPL2Q3MIP1 535 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 ALG10Q5BKT4 473 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 TBC1D3CQ6IPX1 549 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 C17orf107Q6ZR85 190 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 FAM122BQ7Z309 247 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 ZNF546Q86UE3 836 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 TBC1D3Q8IZP1 549 aaPredicted RBP10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 CSNK1A1LQ8N752 337 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 CLEC1AQ8NC01 280 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 RCBTB1Q8NDN9 531 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 OR6N2Q8NGY6 317 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 OR10AC1Q8NH08 325 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 CCL4L1Q8NHW4 92 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 VSTM2LQ96N03 204 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 CCNL2Q96S94 520 aaPredicted RBP10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 TWSG1Q9GZX9 223 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 WDR76Q9H967 626 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 SLC17A5Q9NRA2 495 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 RASL12Q9NYN1 266 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 YBX2Q9Y2T7 364 aaKnown RBP10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 COL4A2P08572 1712 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 ATG2BQ96BY7 2078 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 LAMA3Q16787 3333 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 IGKV1D-42A0A075B6H8 117 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 TRAV14DV4A0A0A6YYC5 116 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 DNASE2O00115 360 aaPredicted RBP10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 WNT11O96014 354 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 MELTFP08582 738 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 OR4E1P0C645 316 aa10.73□□□□□ -0.69
VIPAS39-211ENST00000557658 CFPP27918 469 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms