RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 C20orf196Q8IYI0 205 aa12.4□□□□□ -0.42
VIPAS39-208ENST00000556412 NOXO1Q8NFA2 376 aa12.4□□□□□ -0.42
VIPAS39-208ENST00000556412 OR4Q3Q8NH05 313 aa12.4□□□□□ -0.42
VIPAS39-208ENST00000556412 OR4K13Q8NH42 304 aa12.4□□□□□ -0.42
VIPAS39-208ENST00000556412 ZNF519Q8TB69 540 aa12.4□□□□□ -0.42
VIPAS39-208ENST00000556412 HDAC2Q92769 488 aaKnown RBP12.4□□□□□ -0.42
VIPAS39-208ENST00000556412 SLC29A1Q99808 456 aa12.4□□□□□ -0.42
VIPAS39-208ENST00000556412 B3GAT2Q9NPZ5 323 aa12.4□□□□□ -0.42
VIPAS39-208ENST00000556412 GALNT8Q9NY28 637 aa12.4□□□□□ -0.42
VIPAS39-208ENST00000556412 ZGRF1Q86YA3 2104 aa12.4□□□□□ -0.42
VIPAS39-208ENST00000556412 OR6C65A6NJZ3 312 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 ZNF587BE7ETH6 402 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 BHLHE40O14503 412 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 MGRN1O60291 552 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 ATP6V1G2O95670 118 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 PGA4P0DJD7 388 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 PGA3P0DJD8 388 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 CRISP1P54107 249 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 ROR2Q01974 943 aaKnown RBP12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 GINS1Q14691 196 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 TSC22D1Q15714 1073 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 PGGHGQ32M88 737 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 ZIK1Q3SY52 487 aaPredicted RBP12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 PHYHD1Q5SRE7 291 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 SLC27A4Q6P1M0 643 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 Q6ZT83 130 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 CXorf67Q86X51 503 aaPredicted RBP12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 PARP8Q8N3A8 854 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 LRRC46Q96FV0 321 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 RERGLQ9H628 205 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 CRLF2Q9HC73 371 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 USE1Q9NZ43 259 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 JKAMPQ9P055 326 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 MALT1Q9UDY8 824 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 ENOPH1Q9UHY7 261 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 A1L4Q6 167 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 WIPF3A6NGB9 483 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 LYZL6O75951 148 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 APEHP13798 732 aaKnown RBP12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 HIST1H1CP16403 213 aaKnown RBP12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 RAD23AP54725 363 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 FOXG1P55316 489 aaPredicted RBP12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 ESRRGP62508 458 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 FMODQ06828 376 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 FAM27E3Q08E93 113 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 LEG1Q6P5S2 330 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 ABHD12BQ7Z5M8 362 aaPredicted RBP12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 SDR9C7Q8NEX9 313 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 OR52E2Q8NGJ4 325 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 NMNAT3Q96T66 252 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 GLTPQ9NZD2 209 aa12.39□□□□□ -0.43
VIPAS39-208ENST00000556412 UBR5O95071 2799 aaPredicted RBP12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 ESPL1Q14674 2120 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 CIB4A0PJX0 185 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 ARPC3O15145 178 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 SLC2A10O95528 541 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 QDPRP09417 244 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 GRNP28799 593 aaKnown RBP12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 EPHA2P29317 976 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 POLR2IP36954 125 aaKnown RBP12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 CD79BP40259 229 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 GIPRP48546 466 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 ITGADQ13349 1161 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 SNTB1Q13884 538 aaKnown RBP12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 PTGES3Q15185 160 aaKnown RBP12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 LINGO2Q7L985 606 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 GABRG1Q8N1C3 465 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 LNX2Q8N448 690 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 NSMAFQ92636 917 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 TMEM54Q969K7 222 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 RBP7Q96R05 134 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 KCNK17Q96T54 332 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 TEX12Q9BXU0 123 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 MRPL13Q9BYD1 178 aaKnown RBP12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 LINC00470Q9BZP3 86 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 SYT4Q9H2B2 425 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 GPR35Q9HC97 309 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 FOXD3Q9UJU5 478 aaPredicted RBP12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 BAIAP2Q9UQB8 552 aa12.38□□□□□ -0.43
VIPAS39-208ENST00000556412 PRSS37A4D1T9 235 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 RIIAD1A6NNX1 92 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 IMPA2O14732 288 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 IDH3BO43837 385 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 RAD51DO75771 328 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 SEC14L2O76054 403 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 CNOT4O95628 575 aaKnown RBP12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 TXNDC12O95881 172 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 IGHV1-2P23083 117 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 IL32P24001 234 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 CDKN2AP42771 156 aaKnown RBP12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 NPRL3Q12980 569 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 P2RY6Q15077 328 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 CEACAM16Q2WEN9 425 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 ACSM5Q6NUN0 579 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 PTCHD4Q6ZW05 846 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 ADCK1Q86TW2 530 aa12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 RNASE6Q93091 150 aaKnown RBP12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 KISS1RQ969F8 398 aaPredicted RBP12.37□□□□□ -0.43
VIPAS39-208ENST00000556412 MCHR2Q969V1 340 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms