RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 NAT1P18440 290 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 RPL18Q07020 188 aaKnown RBP13.55□□□□□ -0.24
CUX1-215ENST00000556210 PRAMEF8Q5VWM4 474 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 PRAMEF7Q5VXH5 474 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 RPL22L1Q6P5R6 122 aaKnown RBP13.55□□□□□ -0.24
CUX1-215ENST00000556210 PLXDC1Q8IUK5 500 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 TMEM156Q8N614 296 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 OR13C3Q8NGS6 347 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 PPP1R14AQ96A00 147 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 KCTD12Q96CX2 325 aaKnown RBP13.55□□□□□ -0.24
CUX1-215ENST00000556210 FAM71F1Q96KD3 344 aaPredicted RBP13.55□□□□□ -0.24
CUX1-215ENST00000556210 KCNK15Q9H427 330 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 NOX3Q9HBY0 568 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 KCNG2Q9UJ96 466 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 ZNF726A6NNF4 738 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 PEX14O75381 377 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 ERGP11308 486 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 CXCL3P19876 107 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 NPR2P20594 1047 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 PTBP1P26599 531 aaKnown RBP eCLIP13.55□□□□□ -0.244e-11■■■■■ 42.8
CUX1-215ENST00000556210 RIDAP52758 137 aaKnown RBP13.55□□□□□ -0.24
CUX1-215ENST00000556210 CD226Q15762 336 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 KCTD18Q6PI47 426 aaPredicted RBP13.55□□□□□ -0.24
CUX1-215ENST00000556210 CFAP77Q6ZQR2 320 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 CMTM4Q8IZR5 234 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 C9orf62Q8N4C0 152 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 ACBD4Q8NC06 268 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 GPR148Q8TDV2 347 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 RBP7Q96R05 134 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 OR1F2PQ96R84 312 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 FKRPQ9H9S5 495 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 NRIP3Q9NQ35 241 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 ANKRD10Q9NXR5 420 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 EPHA6Q9UF33 1036 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 ACAD8Q9UKU7 415 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 DNAJC13O75165 2243 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 M6PRP20645 277 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 MAPK3P27361 379 aaPredicted RBP13.55□□□□□ -0.24
CUX1-215ENST00000556210 LTBQ06643 244 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 TOMM34Q15785 309 aaPredicted RBP13.55□□□□□ -0.24
CUX1-215ENST00000556210 CDNFQ49AH0 187 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 LANCL3Q6ZV70 420 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 SLC25A44Q96H78 314 aaPredicted RBP13.55□□□□□ -0.24
CUX1-215ENST00000556210 C2orf42Q9NWW7 574 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 PRICKLE3O43900 615 aaPredicted RBP13.55□□□□□ -0.24
CUX1-215ENST00000556210 SPDEFO95238 335 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 IGKV1D-16P01601 117 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 AMY2AP04746 511 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 ATP1B1P05026 303 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 ZNF20P17024 532 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 METTL11BQ5VVY1 283 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 SFXN2Q96NB2 322 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 TRPV4Q9HBA0 871 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 PTTG3PQ9NZH4 202 aa13.55□□□□□ -0.24
CUX1-215ENST00000556210 VSX1Q9NZR4 365 aaPredicted RBP13.55□□□□□ -0.24
CUX1-215ENST00000556210 GPN3Q9UHW5 284 aaPredicted RBP13.55□□□□□ -0.24
CUX1-215ENST00000556210 A0A0B4J2E0 115 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 A0A1B0GX12 115 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 FITM1A5D6W6 292 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 CYR61O00622 381 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 UBL3O95164 117 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 PNMTP11086 282 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 PGAM2P15259 253 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 C19orf48Q6RUI8 117 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 SLC22A18ASQ8N1D0 253 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 OR5D18Q8NGL1 313 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 ANKRD9Q96BM1 317 aaPredicted RBP13.54□□□□□ -0.24
CUX1-215ENST00000556210 DEFB126Q9BYW3 111 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 ADGRL4Q9HBW9 690 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 ISYNA1Q9NPH2 558 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 SDHAF3Q9NRP4 125 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 MED29Q9NX70 200 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 DNAJB12Q9NXW2 375 aaKnown RBP13.54□□□□□ -0.24
CUX1-215ENST00000556210 PPP4R1LQ9P1A2 415 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 COPS3Q9UNS2 423 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 EMC9Q9Y3B6 208 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 TTC28Q96AY4 2481 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 SUSD5O60279 629 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 ZFPL1O95159 310 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 TP53P04637 393 aaPredicted RBP13.54□□□□□ -0.24
CUX1-215ENST00000556210 SLC2A5P22732 501 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 CDKN2AP42771 156 aaKnown RBP13.54□□□□□ -0.24
CUX1-215ENST00000556210 LCORQ96JN0 433 aaPredicted RBP13.54□□□□□ -0.24
CUX1-215ENST00000556210 OR5B2Q96R09 309 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 PRSS27Q9BQR3 290 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 FSCN3Q9NQT6 498 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 CYSLTR2Q9NS75 346 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 TP53BP1Q12888 1972 aaPredicted RBP13.54□□□□□ -0.24
CUX1-215ENST00000556210 C5orf67F2Z3F1 127 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 SEC14L5O43304 696 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 OIP5O43482 229 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 TRAPPC6AO75865 159 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 ITGA5P08648 1049 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 PSMB1P20618 241 aaKnown RBP13.54□□□□□ -0.24
CUX1-215ENST00000556210 CCNOP22674 350 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 DCTDP32321 178 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 FRKP42685 505 aaPredicted RBP13.54□□□□□ -0.24
CUX1-215ENST00000556210 ZNF41P51814 821 aaPredicted RBP13.54□□□□□ -0.24
CUX1-215ENST00000556210 CAMK2DQ13557 499 aa13.54□□□□□ -0.24
CUX1-215ENST00000556210 SAV1Q9H4B6 383 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms