RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 SERINC1Q9NRX5 453 aa9.27□□□□□ -0.93
SHMT2-215ENST00000554656 EMC3Q9P0I2 261 aa9.27□□□□□ -0.93
SHMT2-215ENST00000554656 PDP1Q9P0J1 537 aaPredicted RBP9.27□□□□□ -0.93
SHMT2-215ENST00000554656 TESQ9UGI8 421 aaKnown RBP9.27□□□□□ -0.93
SHMT2-215ENST00000554656 TMEFF2Q9UIK5 374 aaPredicted RBP9.27□□□□□ -0.93
SHMT2-215ENST00000554656 A4GNTQ9UNA3 340 aa9.27□□□□□ -0.93
SHMT2-215ENST00000554656 CHST2Q9Y4C5 530 aa9.27□□□□□ -0.93
SHMT2-215ENST00000554656 U3KQV3 271 aa9.27□□□□□ -0.93
SHMT2-215ENST00000554656 TMED7-TICAM2A0A0A6YYA0 188 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 CIB4A0PJX0 185 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 TMEM72A0PK05 275 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 MAGEA13PA6NCF6 341 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 M0R3H8 397 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 FFAR1O14842 300 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 DNPH1O43598 174 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 TLX2O43763 284 aaPredicted RBP9.26□□□□□ -0.93
SHMT2-215ENST00000554656 CCNB2O95067 398 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 SNAP29O95721 258 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 CCNA2P20248 432 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 TTKP33981 857 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 IDH2P48735 452 aaKnown RBP9.26□□□□□ -0.93
SHMT2-215ENST00000554656 OR2B6P58173 313 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 ST3GAL3Q11203 375 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 TRAM2Q15035 370 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 NPTX1Q15818 432 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 GABRA6Q16445 453 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 C6orf52Q5T4I8 152 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 MRPL2Q5T653 305 aaKnown RBP9.26□□□□□ -0.93
SHMT2-215ENST00000554656 C9orf135Q5VTT2 229 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 COMTD1Q86VU5 262 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 UBE2J2Q8N2K1 259 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 PIAS4Q8N2W9 510 aaPredicted RBP9.26□□□□□ -0.93
SHMT2-215ENST00000554656 PARP8Q8N3A8 854 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 CLIP4Q8N3C7 705 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 ZNF555Q8NEP9 628 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 ZNF563Q8TA94 476 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 VANGL1Q8TAA9 524 aaPredicted RBP9.26□□□□□ -0.93
SHMT2-215ENST00000554656 PIGXQ8TBF5 258 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 DHRS9Q9BPW9 319 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 FNDC11Q9BVV2 318 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 C1QTNF6Q9BXI9 259 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 YTHDF1Q9BYJ9 559 aaKnown RBP9.26□□□□□ -0.93
SHMT2-215ENST00000554656 SMURF2Q9HAU4 748 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 BARX1Q9HBU1 254 aaPredicted RBP9.26□□□□□ -0.93
SHMT2-215ENST00000554656 SLC7A10Q9NS82 523 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 TAS2R16Q9NYV7 291 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 KIF17Q9P2E2 1029 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 OSGIN1Q9UJX0 560 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 MGAT4BQ9UQ53 548 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 POFUT2Q9Y2G5 429 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 TMED7Q9Y3B3 224 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 HDGFL3Q9Y3E1 203 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 FLVCR1Q9Y5Y0 555 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 HSPE1-MOB4S4R3N1 261 aa9.26□□□□□ -0.93
SHMT2-215ENST00000554656 J3KTA2 159 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 M0R1B8 84 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 TP53P04637 393 aaPredicted RBP9.25□□□□□ -0.93
SHMT2-215ENST00000554656 CBLP22681 906 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 PTAFRP25105 342 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 DAPP51397 102 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 NUDT6P53370 316 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 COX10Q12887 443 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 PPP1R8Q12972 351 aaKnown RBP9.25□□□□□ -0.93
SHMT2-215ENST00000554656 SLC17A1Q14916 467 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 TSPO2Q5TGU0 170 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 AGAP6Q5VW22 663 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 ZNF770Q6IQ21 691 aaPredicted RBP9.25□□□□□ -0.93
SHMT2-215ENST00000554656 KRT80Q6KB66 452 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 ZNF613Q6PF04 617 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 SLC22A25Q6T423 547 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 TMEM108Q6UXF1 575 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 CASP12Q6UXS9 341 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 CD300LDQ6UXZ3 194 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 RBM45Q8IUH3 476 aaKnown RBP9.25□□□□□ -0.93
SHMT2-215ENST00000554656 PHC2Q8IXK0 858 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 HS3ST5Q8IZT8 346 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 ZNF525Q8N782 197 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 ATG16L2Q8NAA4 619 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 SLC38A4Q969I6 547 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 ZHX1-C8orf76Q96EF9 292 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 MUS81Q96NY9 551 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 MCHR1Q99705 422 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 REPIN1Q9BWE0 567 aaKnown RBP9.25□□□□□ -0.93
SHMT2-215ENST00000554656 DGCR6LQ9BY27 220 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 GABARAPL3Q9BY60 117 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 TOR3AQ9H497 397 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 ZNF556Q9HAH1 456 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 KRT84Q9NSB2 600 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 CBLN4Q9NTU7 201 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 FAIMQ9NVQ4 179 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 FAM118AQ9NWS6 357 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 ASB6Q9NWX5 421 aa9.25□□□□□ -0.93
SHMT2-215ENST00000554656 SPIN1Q9Y657 262 aaPredicted RBP9.25□□□□□ -0.93
SHMT2-215ENST00000554656 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.25□□□□□ -0.932e-7■■■■■ 36.5
SHMT2-215ENST00000554656 SH3PXD2BA1X283 911 aa9.24□□□□□ -0.93
SHMT2-215ENST00000554656 TRAPPC13A5PLN9 417 aa9.24□□□□□ -0.93
SHMT2-215ENST00000554656 ELOA3DA6NLF2 546 aaPredicted RBP9.24□□□□□ -0.93
SHMT2-215ENST00000554656 A8MV72 311 aaPredicted RBP9.24□□□□□ -0.93
SHMT2-215ENST00000554656 E9PQ18 207 aa9.24□□□□□ -0.93
SHMT2-215ENST00000554656 H7C417 338 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms