RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 DOCK10Q96BY6 2186 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TRAV8-7A0A075B6U6 113 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 LOC101059948A0A1B0GTJ6 334 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TRABD2BA6NFA1 517 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 LILRA5A6NI73 299 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 GATBO75879 557 aaKnown RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 KDM4BO94953 1096 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 IL33O95760 270 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 OR2T7P0C7T2 308 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 PGCP20142 388 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 OTX2P32243 289 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 PITPNBP48739 271 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 NRG3P56975 720 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TLE3Q04726 772 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 EIF2B1Q14232 305 aaKnown RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM44Q2T9K0 475 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM176BQ3YBM2 270 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 TRIM61Q5EBN2 209 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 HBMQ6B0K9 141 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 SLC25A25Q6KCM7 469 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 MRGPREQ86SM8 312 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 GLB1L2Q8IW92 636 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 GPALPP1Q8IXQ4 340 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 RBM12BQ8IXT5 1001 aaKnown RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 SPEM1Q8N4L4 309 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 GDPD1Q8N9F7 314 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 CHST4Q8NCG5 386 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 OR2T27Q8NH04 317 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 OR52I2Q8NH67 350 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 SYNPRQ8TBG9 265 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 SHDQ96IW2 340 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 CYYR1Q96J86 154 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 PGLYRP3Q96LB9 341 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 CCDC74BQ96LY2 380 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 CMKLR1Q99788 373 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 HOXD1Q9GZZ0 328 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 PPP1R3EQ9H7J1 279 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 LIN7BQ9HAP6 207 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 NRIP3Q9NQ35 241 aa5.06□□□□□ -1.6
LIMA1-215ENST00000552823 MRM2Q9UI43 246 aaKnown RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 MRTO4Q9UKD2 239 aaKnown RBP5.06□□□□□ -1.6
LIMA1-215ENST00000552823 ATG2AQ2TAZ0 1938 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 TRAV18A0A075B6X5 111 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 PMS2P1A4D2B8 440 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 FAM172BPA6NC97 362 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 NPIPA5E9PKD4 350 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 GLCEO94923 617 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 SIX6O95475 246 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 CLPSP04118 112 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ANKRD34CP0C6C1 535 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF823P16415 610 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ENDOUP21128 410 aaKnown RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 FGF9P31371 208 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 CAPZA2P47755 286 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ARFIP1P53367 373 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 LIMK1P53667 647 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 FOXF1Q12946 379 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 SNTB2Q13425 540 aaKnown RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 GPR50Q13585 617 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 C1orf140Q5VVS0 124 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 B3GNTL1Q67FW5 361 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 NDUFAF7Q7L592 441 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 FGD2Q7Z6J4 655 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 BMPERQ8N8U9 685 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 MINDY2Q8NBR6 621 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 TOR1AIP2Q8NFQ8 470 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 OR6F1Q8NGZ6 308 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 SLC7A6Q92536 515 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF501Q96CX3 271 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 NXPE2Q96DL1 559 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 MS4A3Q96HJ5 214 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ST6GAL2Q96JF0 529 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 GNRHR2Q96P88 292 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 INTS14Q96SY0 518 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM43Q9BTV4 400 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 MED28Q9H204 178 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 MRPS18AQ9NVS2 196 aaKnown RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 PPP4R1LQ9P1A2 415 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ST6GALNAC2Q9UJ37 374 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ELF5Q9UKW6 265 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 NPIPA1Q9UND3 350 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 B9D1Q9UPM9 204 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 EMC9Q9Y3B6 208 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 PCDHGB2Q9Y5G2 931 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 A3GALT2U3KPV4 340 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 IGKV1D-43A0A0B4J1Z2 117 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 HTR3EA5X5Y0 456 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 NPIPB9F8W1W9 429 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 P2RY10O00398 339 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 GMDSO60547 372 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 RAMP1O60894 148 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ARL6IP5O75915 188 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 PLATP00750 562 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 EPXP11678 715 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 DCTDP32321 178 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 PRPS1P60891 318 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 TAF13Q15543 124 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 SGCAQ16586 387 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 SLC25A30Q5SVS4 291 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms