RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 RANBP3Q9H6Z4 567 aaPredicted RBP13.7□□□□□ -0.22
CUX1-214ENST00000550008 NOX3Q9HBY0 568 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 SBF1O95248 1867 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 F5H0A9 414 aaPredicted RBP13.7□□□□□ -0.22
CUX1-214ENST00000550008 GOSR2O14653 212 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 FOLR1P15328 257 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 NME1P15531 152 aaKnown RBP13.7□□□□□ -0.22
CUX1-214ENST00000550008 SPNP16150 400 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 ZNF16P17020 682 aaPredicted RBP13.7□□□□□ -0.22
CUX1-214ENST00000550008 TCN2P20062 427 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 TPBGQ13641 420 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 PRTGQ2VWP7 1150 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 ZNF628Q5EBL2 1059 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 OPN5Q6U736 354 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 LINC00696Q6ZRV3 163 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 Q7L0L9 218 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 TOMM40LQ969M1 308 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 SIAEQ9HAT2 523 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 SIGLEC7Q9Y286 467 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 TTC28Q96AY4 2481 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 ZNF850A8MQ14 1090 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 TBX19O60806 448 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 PIAS2O75928 621 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 SLC22A5O76082 557 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 RLN2P04090 185 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 C21orf58P58505 322 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 ACTBP60709 375 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 ACTG1P63261 375 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 PRICKLE4Q2TBC4 344 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 TMEM244Q5VVB8 128 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 FAM199XQ6PEV8 388 aaPredicted RBP13.7□□□□□ -0.22
CUX1-214ENST00000550008 SPACA5Q96QH8 159 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 ZNF442Q9H7R0 627 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 B4GALT7Q9UBV7 327 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 C14orf166Q9Y224 244 aaKnown RBP13.7□□□□□ -0.22
CUX1-214ENST00000550008 SLC22A13Q9Y226 551 aa13.7□□□□□ -0.22
CUX1-214ENST00000550008 ARHGEF17Q96PE2 2063 aaPredicted RBP13.7□□□□□ -0.22
CUX1-214ENST00000550008 IGHV1OR15-9A0A0B4J2B8 117 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 ZNF736B4DX44 427 aaPredicted RBP13.69□□□□□ -0.22
CUX1-214ENST00000550008 GPANK1O95872 356 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 PRKACBP22694 351 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 MRM1Q6IN84 353 aaKnown RBP13.69□□□□□ -0.22
CUX1-214ENST00000550008 GIMAP1Q8WWP7 306 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 HSD17B8Q92506 261 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 COPZ2Q9P299 210 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 A3GALT2U3KPV4 340 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 FCARP24071 287 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 HTR3AP46098 478 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 FCN2Q15485 313 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 GLYATL3Q5SZD4 288 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 DEFB123Q8N688 67 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 KTI12Q96EK9 354 aaPredicted RBP13.69□□□□□ -0.22
CUX1-214ENST00000550008 DERL3Q96Q80 235 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 MAB21L2Q9Y586 359 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 SULT1C4O75897 302 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 CBX7O95931 251 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 IFNA21P01568 189 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 GLB1P16278 677 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 RBM34P42696 430 aaKnown RBP13.69□□□□□ -0.22
CUX1-214ENST00000550008 DIO1P49895 249 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 DGCR2P98153 550 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 CDK5Q00535 292 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 FAAP20Q6NZ36 180 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 GRINAQ7Z429 371 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 CMIPQ8IY22 773 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 SPEM1Q8N4L4 309 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 OR51T1Q8NGJ9 327 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 SNAPC3Q92966 411 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 KCNG2Q9UJ96 466 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 CD79AP11912 226 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 SLC25A35Q3KQZ1 300 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 LAIR1Q6GTX8 287 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 MSANTD3Q96H12 275 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 FCRL1Q96LA6 429 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 METTL17Q9H7H0 456 aaPredicted RBP13.69□□□□□ -0.22
CUX1-214ENST00000550008 SLC7A11Q9UPY5 501 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 MOKQ9UQ07 419 aa13.69□□□□□ -0.22
CUX1-214ENST00000550008 NPIPB8E9PQR5 432 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 OR2J2O76002 312 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 NKX2-2O95096 273 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 S100A6P06703 90 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 IL9P15248 144 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 RAB3AP20336 220 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 RBMXP38159 391 aaKnown RBP13.68□□□□□ -0.22
CUX1-214ENST00000550008 VEGFCP49767 419 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 KANSL1Q7Z3B3 1105 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 KCTD20Q7Z5Y7 419 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 FGGYQ96C11 551 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 EMC7Q9NPA0 242 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 LHX9Q9NQ69 397 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 CLEC1BQ9P126 229 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 NUBP2Q9Y5Y2 271 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 EMP3P54852 163 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 FXYD4P59646 89 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 CSNK2A1P68400 391 aaPredicted RBP13.68□□□□□ -0.22
CUX1-214ENST00000550008 CSNK2A3Q8NEV1 391 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 DHRS1Q96LJ7 313 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 REV1Q9UBZ9 1251 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 CHRNA9Q9UGM1 479 aa13.68□□□□□ -0.22
CUX1-214ENST00000550008 FITM1A5D6W6 292 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms