RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 YWHAGP61981 247 aaKnown RBP eCLIP2.78□□□□□ -1.96
VPS29-205ENST00000548539 ACTA2P62736 377 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 ACTG2P63267 376 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 ACTC1P68032 377 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 ACTA1P68133 377 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 ZBED5Q49AG3 693 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 C2orf83Q53S99 150 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 RAET1LQ5VY80 246 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 Q6ZSR3 168 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 HSD17B11Q8NBQ5 300 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 VN1R2Q8NFZ6 395 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 OR1N2Q8NGR9 330 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 TMEM158Q8WZ71 300 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 ELMO1Q92556 727 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 ELSPBP1Q96BH3 223 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 CCDC126Q96EE4 140 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 OR2M2Q96R28 347 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 NRTNQ99748 197 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 SLC29A1Q99808 456 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 HDHD3Q9BSH5 251 aaPredicted RBP2.78□□□□□ -1.96
VPS29-205ENST00000548539 CWH43Q9H720 699 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 ASB8Q9H765 288 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 UGT1A7Q9HAW7 530 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 UGT1A10Q9HAW8 530 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 UGT1A8Q9HAW9 530 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 RAB20Q9NX57 234 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 SLC25A37Q9NYZ2 338 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 PRO0461Q9UI25 63 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 PACSIN2Q9UNF0 486 aaPredicted RBP2.78□□□□□ -1.96
VPS29-205ENST00000548539 PRG3Q9Y2Y8 225 aaPredicted RBP2.78□□□□□ -1.96
VPS29-205ENST00000548539 PDS5BQ9NTI5 1447 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 A0A075B6Q4 140 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 A0A1B0GVI7 797 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 CIB4A0PJX0 185 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 A6NDX4 124 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 ZNF726A6NNF4 738 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 F6UB75 175 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 H0Y9J4 135 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 RAB29O14966 203 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 EIF3HO15372 352 aaKnown RBP eCLIP2.77□□□□□ -1.97
VPS29-205ENST00000548539 CLOCKO15516 846 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 FTH1P02794 183 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 NSG1P42857 185 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 CDKN1BP46527 198 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 RPS10P46783 165 aaKnown RBP2.77□□□□□ -1.97
VPS29-205ENST00000548539 TMED10P49755 219 aaKnown RBP2.77□□□□□ -1.97
VPS29-205ENST00000548539 CCNHP51946 323 aaPredicted RBP2.77□□□□□ -1.97
VPS29-205ENST00000548539 ZNF92Q03936 586 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 ECH1Q13011 328 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 AQP6Q13520 282 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 IDI1Q13907 227 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 ARHGAP19Q14CB8 494 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 RFX4Q33E94 735 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 LY6G6FQ5SQ64 297 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 FRMPD2BQ6IN97 320 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 METAP1DQ6UB28 335 aaPredicted RBP2.77□□□□□ -1.97
VPS29-205ENST00000548539 ZNF621Q6ZSS3 439 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 COX15Q7KZN9 410 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 KRTAP11-1Q8IUC1 163 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 GTPBP8Q8N3Z3 284 aaPredicted RBP2.77□□□□□ -1.97
VPS29-205ENST00000548539 Q8N9W7 124 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 NPBQ8NG41 125 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 OR5B3Q8NH48 314 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 SLC7A13Q8TCU3 470 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 DTX3LQ8TDB6 740 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 GPR151Q8TDV0 419 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 CXorf40AQ8TE69 158 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 DNAJC19Q96DA6 116 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 SLC35E1Q96K37 410 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 TSNARE1Q96NA8 513 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 KCTD14Q9BQ13 255 aaPredicted RBP2.77□□□□□ -1.97
VPS29-205ENST00000548539 ILKAPQ9H0C8 392 aaPredicted RBP2.77□□□□□ -1.97
VPS29-205ENST00000548539 NEK6Q9HC98 313 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 ZNF160Q9HCG1 818 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 FGF20Q9NP95 211 aaPredicted RBP2.77□□□□□ -1.97
VPS29-205ENST00000548539 PTTG3PQ9NZH4 202 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 TP53TG5Q9Y2B4 290 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 CACNG2Q9Y698 323 aa2.77□□□□□ -1.97
VPS29-205ENST00000548539 PHF3Q92576 2039 aaKnown RBP2.76□□□□□ -1.97
VPS29-205ENST00000548539 NINLQ9Y2I6 1382 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 RLFQ13129 1914 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 LRRIQ3A6PVS8 624 aaPredicted RBP2.76□□□□□ -1.97
VPS29-205ENST00000548539 TCP11X1B4DZS4 312 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 C9JVG2 144 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 DYNC1I1O14576 645 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 DNAJB6O75190 326 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 EIF3GO75821 320 aaKnown RBP eCLIP2.76□□□□□ -1.97
VPS29-205ENST00000548539 AGTP01019 485 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 DRD3P35462 400 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 SYKP43405 635 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 TFPI2P48307 235 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 ZNF133P52736 654 aaPredicted RBP2.76□□□□□ -1.97
VPS29-205ENST00000548539 GBE1Q04446 702 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 SGCAQ16586 387 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 GUCA2BQ16661 112 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 SOHLH1Q5JUK2 328 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 ANKRD26P1Q6NSI1 321 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 CCDC73Q6ZRK6 1079 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 LINC00173Q6ZV60 143 aa2.76□□□□□ -1.97
VPS29-205ENST00000548539 SLC34A3Q8N130 599 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms