RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CR1LQ2VPA4 569 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 FAM91A1Q658Y4 838 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 NLRC3Q7RTR2 1065 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 KRT73Q86Y46 540 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 CCDC36Q8IYA8 594 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 ZNF786Q8N393 782 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 ZNF540Q8NDQ6 660 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 ADPRHL1Q8NDY3 354 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 OR6S1Q8NH40 331 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 UBASH3BQ8TF42 649 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 CKAP2Q8WWK9 683 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 WDR89Q96FK6 387 aaPredicted RBP7.3□□□□□ -1.24
USP28-215ENST00000545608 LRR1Q96L50 414 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 C7orf26Q96N11 449 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 ANKRD27Q96NW4 1050 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 MOGAT1Q96PD6 335 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 SPATA5L1Q9BVQ7 753 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 C19orf24Q9BVV8 132 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 TMEM38AQ9H6F2 299 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 TMEM27Q9HBJ8 222 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 SLCO1B3Q9NPD5 702 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 TCF7L2Q9NQB0 619 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 CCDC167Q9P0B6 97 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 TESQ9UGI8 421 aaKnown RBP7.3□□□□□ -1.24
USP28-215ENST00000545608 USP22Q9UPT9 525 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 GMEB1Q9Y692 573 aa7.3□□□□□ -1.24
USP28-215ENST00000545608 PRORSD1PA6NEY8 169 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 ZNF726A6NNF4 738 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 PLPP3O14495 311 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 SHOX2O60902 331 aaPredicted RBP7.29□□□□□ -1.24
USP28-215ENST00000545608 MFN2O95140 757 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 TGDSO95455 350 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 CD79AP11912 226 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 ZNF35P13682 527 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 ZNF14P17017 642 aaPredicted RBP7.29□□□□□ -1.24
USP28-215ENST00000545608 GPX2P18283 190 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 PPIBP23284 216 aaKnown RBP7.29□□□□□ -1.24
USP28-215ENST00000545608 SLC6A2P23975 617 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 CDH12P55289 794 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 RGS8P57771 180 aaPredicted RBP7.29□□□□□ -1.24
USP28-215ENST00000545608 ID3Q02535 119 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 POU3F1Q03052 451 aaPredicted RBP7.29□□□□□ -1.24
USP28-215ENST00000545608 PMS2P3Q13401 168 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 CAMK2DQ13557 499 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 RIN1Q13671 783 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 MFSD13AQ14CX5 517 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 TRIP10Q15642 601 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 AGKQ53H12 422 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 DLEU7Q6UYE1 221 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 ZNF813Q6ZN06 617 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 ZNF627Q7L945 461 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 C10orf53Q8N6V4 93 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 SCAIQ8N9R8 606 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 SMYD1Q8NB12 490 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 IL17RDQ8NFM7 739 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 EPYCQ99645 322 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 CCDC28BQ9BUN5 200 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 ASPNQ9BXN1 380 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 MRPL37Q9BZE1 423 aaKnown RBP7.29□□□□□ -1.24
USP28-215ENST00000545608 WNT10AQ9GZT5 417 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 TPK1Q9H3S4 243 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 DYNLRB1Q9NP97 96 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 MRPL39Q9NYK5 338 aaKnown RBP7.29□□□□□ -1.24
USP28-215ENST00000545608 ZNF224Q9NZL3 707 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 SELENONQ9NZV5 590 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 FBXO9Q9UK97 447 aaPredicted RBP7.29□□□□□ -1.24
USP28-215ENST00000545608 POFUT2Q9Y2G5 429 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 CMAHPQ9Y471 501 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 NOX1Q9Y5S8 564 aa7.29□□□□□ -1.24
USP28-215ENST00000545608 EVPLLA8MZ36 301 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 C11orf98E9PRG8 122 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 M0QX08 132 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 M0R3H8 397 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 SERPINB7O75635 380 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 SERPINI2O75830 405 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 LYPD3O95274 346 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 OPN1SWP03999 348 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 THY1P04216 161 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 ERCC1P07992 297 aaPredicted RBP7.28□□□□□ -1.24
USP28-215ENST00000545608 PATE4P0C8F1 98 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 IFNGR1P15260 489 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 B4GALT1P15291 398 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 TCN1P20061 433 aaPredicted RBP7.28□□□□□ -1.24
USP28-215ENST00000545608 HNF1AP20823 631 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 AHCYP23526 432 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 COL8A2P25067 703 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 APEX1P27695 318 aaKnown RBP7.28□□□□□ -1.24
USP28-215ENST00000545608 GLRXP35754 106 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 PTDSS1P48651 473 aaKnown RBP7.28□□□□□ -1.24
USP28-215ENST00000545608 CHN2P52757 468 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 SEC24CP53992 1094 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 GYS2P54840 703 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 NCALDP61601 193 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 RAB1AP62820 205 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 PUDPQ08623 228 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 SQLEQ14534 574 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 RAB39AQ14964 217 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 NPTX1Q15818 432 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 DUSP7Q16829 419 aa7.28□□□□□ -1.24
USP28-215ENST00000545608 GSG1Q2KHT4 349 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms