RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 NPIPA3F8WFD2 350 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 SHOXO15266 292 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 FABP7O15540 132 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 SYT7O43581 403 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 OR2T1O43869 369 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 NSA2O95478 260 aaKnown RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 TP53P04637 393 aaPredicted RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 ITGA5P08648 1049 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 CALCBP10092 127 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 COL9A1P20849 921 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 CCR6P51684 374 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 ACY1Q03154 408 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 EMC4Q5J8M3 183 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 FAM122BQ7Z309 247 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 GRAMD2AQ8IUY3 354 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 OR13C5Q8NGS8 318 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 OR6N1Q8NGY5 312 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 RLN3Q8WXF3 142 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 FOXRED1Q96CU9 486 aaPredicted RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 DEFB126Q9BYW3 111 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 PRRG4Q9BZD6 226 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 POMT2Q9UKY4 750 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 SRPK3Q9UPE1 567 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 OTOL1A6NHN0 477 aaPredicted RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 H3BQ06 376 aaPredicted RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 SFTPBP07988 381 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 CD14P08571 375 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 CLUP10909 449 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 ST6GAL1P15907 406 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 CD1CP29017 333 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 DIO1P49895 249 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 ACSM1Q08AH1 577 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 DYRK1AQ13627 763 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 CD276Q5ZPR3 534 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 VN1R4Q7Z5H5 301 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 MARCH3Q86UD3 253 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 EID2Q8N6I1 236 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 NLGN4YQ8NFZ3 816 aaPredicted RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 ZFAND1Q8TCF1 268 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 SMIM19Q96E16 107 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 ZNF587Q96SQ5 575 aaPredicted RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 PCYT1BQ9Y5K3 369 aaPredicted RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 DOCK3Q8IZD9 2030 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 TMED7-TICAM2A0A0A6YYA0 188 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 TRAV1-2A0A0B4J238 106 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 TRBV11-1A0A0K0K1C0 115 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 H0YIG0 161 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 ZNF749O43361 778 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 POU3F3P20264 500 aaPredicted RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 NFYAP23511 347 aaPredicted RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 CLDN12P56749 244 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 HERV-K104P61576 105 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 HSD11B2P80365 405 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 HYAL1Q12794 435 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 RNASE10Q5GAN6 216 aaKnown RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 TMPRSS11FQ6ZWK6 438 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 OR6V1Q8N148 313 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 ZNF454Q8N9F8 522 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 STK35Q8TDR2 534 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 MR1Q95460 341 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 SORCS2Q96PQ0 1159 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 OR2A5Q96R48 311 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 NAA11Q9BSU3 229 aaPredicted RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 SLC19A3Q9BZV2 496 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 LAT2Q9GZY6 243 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 TMED7Q9Y3B3 224 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 DOCK4Q8N1I0 1966 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 MEIS3P1A6NDR6 274 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 CTSVO60911 334 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 MT-ATP6P00846 226 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 SLC2A5P22732 501 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 SDHAP31040 664 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 KIR2DL3P43628 341 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 CAPZBP47756 277 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 ZNF84P51523 738 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 RACK1P63244 317 aaKnown RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 CDK5R1Q15078 307 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 SGCAQ16586 387 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 C9orf50Q5SZB4 431 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 GPR155Q7Z3F1 870 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 TCTE3Q8IZS6 198 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 RCBTB1Q8NDN9 531 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 SLC6A7Q99884 636 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 C20orf141Q9NUB4 165 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 DNAJB12Q9NXW2 375 aaKnown RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 ABI3Q9P2A4 366 aa5.3□□□□□ -1.56
VPS50-220ENST00000544910 ZMAT5Q9UDW3 170 aaKnown RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 ATXN7L1Q9ULK2 861 aaPredicted RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 YBX2Q9Y2T7 364 aaKnown RBP5.3□□□□□ -1.56
VPS50-220ENST00000544910 TRABD2BA6NFA1 517 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 OR6C76A6NM76 312 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 FBXO45P0C2W1 286 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 LIMS3P0CW19 117 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 LIMS4P0CW20 117 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 CD27P26842 260 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 TAS2R19P59542 299 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 BTG2P78543 158 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 STK11Q15831 433 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 CHRFAM7AQ494W8 412 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 SIGIRRQ6IA17 410 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms