RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 ZFP82Q8N141 532 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 FAM160A2Q8N612 972 aaPredicted RBP7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 SAMD12Q8N8I0 201 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 ADPRHL1Q8NDY3 354 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 OR52I1Q8NGK6 324 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 OR5P2Q8WZ92 322 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 SLC6A18Q96N87 628 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 GPR174Q9BXC1 333 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 POFUT1Q9H488 388 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 CTPS2Q9NRF8 586 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 ACER3Q9NUN7 267 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 PILRAQ9UKJ1 303 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 A0A087X0M5 115 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 A0A1B0GX30 115 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 A0A1W2PPC4 97 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 SHISA3A0PJX4 238 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 CXorf65A6NEN9 183 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 PRAMEF25A6NGN4 478 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 AIPO00170 330 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 RAB36O95755 333 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 HPXP02790 462 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 MT-ND4P03905 459 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 HEXAP06865 529 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 UGT2B7P16662 529 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 CELP19835 753 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 CXCL2P19875 107 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 C4BPBP20851 252 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 HIST1H1TP22492 207 aaPredicted RBP7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 SSR2P43308 183 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 CAPZBP47756 277 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 WNT4P56705 351 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 KIR2DS3Q14952 304 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 GCNT6Q5T4J0 391 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 DMRTA1Q5VZB9 504 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 ZNF613Q6PF04 617 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 CDK20Q8IZL9 346 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 TOMM5Q8N4H5 51 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 NFKBIDQ8NI38 313 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 NT5CQ8TCD5 201 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 CD300LFQ8TDQ1 290 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 HSD17B8Q92506 261 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 HGDQ93099 445 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 TM4SF19Q96DZ7 209 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 NEURL3Q96EH8 262 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 RSPO3Q9BXY4 272 aaPredicted RBP7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 SRMSQ9H3Y6 488 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 METTL8Q9H825 291 aaKnown RBP7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 LMAN1LQ9HAT1 526 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 GFOD1Q9NXC2 390 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 MRPL15Q9P015 296 aaKnown RBP7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 CES1P1Q9UKY3 287 aa7.31□□□□□ -1.24
PDLIM5-221ENST00000542407 TRIOO75962 3097 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 A0A1W2PR48 441 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 C5orf52A6NGY3 159 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 M0QZK8 103 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 ERI3O43414 337 aaKnown RBP7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 CTSVO60911 334 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 PNPP00491 289 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 TNFP01375 233 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 SERPIND1P05546 499 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 ERCC1P07992 297 aaPredicted RBP7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 ARAFP10398 606 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 DRD2P14416 443 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 DTYMKP23919 212 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 S100A7P31151 101 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 BTCP35070 178 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 CEACAM6P40199 344 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 LSSP48449 732 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 MECP2P51608 486 aaKnown RBP7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 NR0B1P51843 470 aaKnown RBP7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 CNN3Q15417 329 aaKnown RBP7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 FAM74A1Q5RGS3 127 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 RNLSQ5VYX0 342 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 CEACAM20Q6UY09 585 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 QSOX2Q6ZRP7 698 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 TMEM200AQ86VY9 491 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 GCNT2Q8N0V5 402 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 ACOT4Q8N9L9 421 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 OR1N1Q8NGS0 311 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 RLN3Q8WXF3 142 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 SLAMF9Q96A28 289 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 RNFT2Q96EX2 444 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 NUDT11Q96G61 164 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 LRR1Q96L50 414 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 ATG101Q9BSB4 218 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 TMEM208Q9BTX3 173 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 MRI1Q9BV20 369 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 NANSQ9NR45 359 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 ACSS1Q9NUB1 689 aaPredicted RBP7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 MRTO4Q9UKD2 239 aaKnown RBP7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 FLVCR2Q9UPI3 526 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 MAP4K5Q9Y4K4 846 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 ATG4BQ9Y4P1 393 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 TRBV4-1A0A0J9YWV2 114 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 TUBAL3A6NHL2 446 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 SURF4O15260 269 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 P2RX6O15547 441 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 SULT1A3P0DMM9 295 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 SULT1A4P0DMN0 295 aa7.3□□□□□ -1.24
PDLIM5-221ENST00000542407 IL9P15248 144 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 195.5 ms