RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 VSX1Q9NZR4 365 aaPredicted RBP12.64□□□□□ -0.39
LIMK1-208ENST00000538333 TEKT2Q9UIF3 430 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 KCNG2Q9UJ96 466 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 B9D1Q9UPM9 204 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 RBMX2Q9Y388 322 aaKnown RBP12.64□□□□□ -0.39
LIMK1-208ENST00000538333 CACNG2Q9Y698 323 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 TMEM14AQ9Y6G1 99 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 MUC3AQ02505 3323 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 VSTM2BA6NLU5 285 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 PLPP3O14495 311 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 PDCD5O14737 125 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 ONECUT2O95948 504 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 ADRB1P08588 477 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 DPP4P27487 766 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 DGCR2P98153 550 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 UBE2NLQ5JXB2 153 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 OR5M10Q6IEU7 315 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 C5orf46Q6UWT4 87 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 UBALD2Q8IYN6 164 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 OR2G2Q8NGZ5 317 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 ZNF417Q8TAU3 575 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 THAP3Q8WTV1 239 aaPredicted RBP12.64□□□□□ -0.39
LIMK1-208ENST00000538333 HGDQ93099 445 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 RNF170Q96K19 258 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 ZNF587Q96SQ5 575 aaPredicted RBP12.64□□□□□ -0.39
LIMK1-208ENST00000538333 DDX28Q9NUL7 540 aaKnown RBP12.64□□□□□ -0.39
LIMK1-208ENST00000538333 PILRBQ9UKJ0 227 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 IKZF2Q9UKS7 526 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 CAMK2AQ9UQM7 478 aa12.64□□□□□ -0.39
LIMK1-208ENST00000538333 CACNA1CQ13936 2221 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 IGLV1-36A0A0B4J1U3 117 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 ANKUB1A6NFN9 424 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 HSPB2A8KAH6 182 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 PHYHO14832 338 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 CTDSPLO15194 276 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 ORC5O43913 435 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 TMEM127O75204 238 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 TRIM3O75382 744 aaPredicted RBP12.63□□□□□ -0.39
LIMK1-208ENST00000538333 ITGA10O75578 1167 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 ARSBP15848 533 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 SRP9P49458 86 aaKnown RBP12.63□□□□□ -0.39
LIMK1-208ENST00000538333 DLX5P56178 289 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 DCDP81605 110 aaKnown RBP12.63□□□□□ -0.39
LIMK1-208ENST00000538333 HSPB2Q16082 182 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 BCL2A1Q16548 175 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 HES5Q5TA89 166 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 PAPD4Q6PIY7 484 aaKnown RBP12.63□□□□□ -0.39
LIMK1-208ENST00000538333 BAIAP2L2Q6UXY1 529 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 STAC2Q6ZMT1 411 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 CMTM4Q8IZR5 234 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 ZNF671Q8TAW3 534 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 CAPSLQ8WWF8 208 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 ADAMTS14Q8WXS8 1223 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 TMEM234Q8WY98 164 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 SLC25A38Q96DW6 304 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 IER2Q9BTL4 223 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 TP63Q9H3D4 680 aaPredicted RBP12.63□□□□□ -0.39
LIMK1-208ENST00000538333 MRPL39Q9NYK5 338 aaKnown RBP12.63□□□□□ -0.39
LIMK1-208ENST00000538333 SUSD2Q9UGT4 822 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 ING1Q9UK53 422 aaPredicted RBP12.63□□□□□ -0.39
LIMK1-208ENST00000538333 RARRES3Q9UL19 164 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 V9GY05 133 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 C2orf72A6NCS6 295 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 INMT-MINDY4F8WBC2 141 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 OR2T1O43869 369 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 AHSA1O95433 338 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 CD3GP09693 182 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 ADRA2CP18825 462 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 MAPK3P27361 379 aaPredicted RBP12.63□□□□□ -0.39
LIMK1-208ENST00000538333 PITPNAQ00169 270 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 C17orf67Q0P5P2 114 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 SF3B4Q15427 424 aaKnown RBP eCLIP12.63□□□□□ -0.392e-6■■■■■ 28.8
LIMK1-208ENST00000538333 HLA-BQ31612 363 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 UTS2BQ765I0 119 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 PRSS35Q8N3Z0 413 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 OR6S1Q8NH40 331 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 THEM6Q8WUY1 208 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 ST8SIA1Q92185 356 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 CCDC74BQ96LY2 380 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 BEX2Q9BXY8 128 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 GALNT9Q9HCQ5 603 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 MRPL22Q9NWU5 206 aaKnown RBP12.63□□□□□ -0.39
LIMK1-208ENST00000538333 SLCO1C1Q9NYB5 712 aa12.63□□□□□ -0.39
LIMK1-208ENST00000538333 FREM3P0C091 2139 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 SLC22A23A1A5C7 686 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 CENPXA8MT69 81 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 RGS13O14921 159 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 GSTZ1O43708 216 aaPredicted RBP12.62□□□□□ -0.39
LIMK1-208ENST00000538333 ZNF254O75437 659 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 CTLA4P16410 223 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 SUMO3P55854 103 aaPredicted RBP12.62□□□□□ -0.39
LIMK1-208ENST00000538333 BTG1P62324 171 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 CD83Q01151 205 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 FDX2Q6P4F2 183 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 LRRC69Q6ZNQ3 347 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 KRT74Q7RTS7 529 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 LRRTM1Q86UE6 522 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 ZNF433Q8N7K0 673 aaPredicted RBP12.62□□□□□ -0.39
LIMK1-208ENST00000538333 BMPERQ8N8U9 685 aa12.62□□□□□ -0.39
LIMK1-208ENST00000538333 NSMAFQ92636 917 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms