RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 CLDN17P56750 224 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 KRTAP10-11P60412 298 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 BTG1P62324 171 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 RAB1AP62820 205 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 CLCQ05315 142 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 RBBP4Q09028 425 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 TP53BP2Q13625 1128 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 PDE7AQ13946 482 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 RAB39AQ14964 217 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 ZMYND11Q15326 602 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 MOGQ16653 247 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 TTMPQ5BVD1 217 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 ZBTB37Q5TC79 503 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 CLEC6AQ6EIG7 209 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 ZNF774Q6NX45 483 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 ZNF813Q6ZN06 617 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 OLIG3Q7RTU3 272 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 LRRC28Q86X40 367 aaPredicted RBP5.36□□□□□ -1.55
CD44-237ENST00000534082 ZNF584Q8IVC4 421 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 LRRC8AQ8IWT6 810 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 DDIASQ8IXT1 998 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 PAQR4Q8N4S7 273 aaPredicted RBP5.36□□□□□ -1.55
CD44-237ENST00000534082 KLHDC1Q8N7A1 406 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 ICA1LQ8NDH6 482 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 OR4F17Q8NGA8 305 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 OR5D16Q8NGK9 328 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 FAM76AQ8TAV0 307 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 ZNF519Q8TB69 540 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 PYROXD1Q8WU10 500 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 GATAD2BQ8WXI9 593 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 C11orf40Q8WZ69 217 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 THOC1Q96FV9 657 aaKnown RBP5.36□□□□□ -1.55
CD44-237ENST00000534082 OR4F4Q96R69 305 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 ZNF382Q96SR6 550 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 SDF2Q99470 211 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 PCGF1Q9BSM1 259 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 CENPHQ9H3R5 247 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 TMEM165Q9HC07 324 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 TMEM106BQ9NUM4 274 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 ACOXLQ9NUZ1 547 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 GPATCH2Q9NW75 528 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 ZNF224Q9NZL3 707 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 KIF17Q9P2E2 1029 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 FBLN5Q9UBX5 448 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 FAF1Q9UNN5 650 aaPredicted RBP5.36□□□□□ -1.55
CD44-237ENST00000534082 RASD1Q9Y272 281 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 SLC35A3Q9Y2D2 325 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 SIGLEC9Q9Y336 463 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 GPR45Q9Y5Y3 372 aa5.36□□□□□ -1.55
CD44-237ENST00000534082 DOCK11Q5JSL3 2073 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 A0A0U1RQK1 487 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 KIR2DS1A0A191URI9 304 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 PLSCR5A0PG75 271 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 RBMY1BA6NDE4 496 aaKnown RBP5.35□□□□□ -1.55
CD44-237ENST00000534082 RBMY1EA6NEQ0 496 aaKnown RBP5.35□□□□□ -1.55
CD44-237ENST00000534082 M0R3G1 203 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 AKAP10O43572 662 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 FCMRO60667 390 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 UBL3O95164 117 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 IGHV3-13P01766 116 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 RBP1P09455 135 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 RBMY1DP0C7P1 496 aaKnown RBP5.35□□□□□ -1.55
CD44-237ENST00000534082 RPS2P15880 293 aaKnown RBP5.35□□□□□ -1.55
CD44-237ENST00000534082 MSX2P35548 267 aaPredicted RBP5.35□□□□□ -1.55
CD44-237ENST00000534082 SERPINB8P50452 374 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 MMP15P51511 669 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 MAP2K6P52564 334 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 EFNB2P52799 333 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 GUCY2DQ02846 1103 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 PMS2P3Q13401 168 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 CAMK2DQ13557 499 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 DCTN2Q13561 401 aaKnown RBP5.35□□□□□ -1.55
CD44-237ENST00000534082 MAPK14Q16539 360 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 IMPG1Q17R60 797 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 FAM153CQ494X1 144 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 SPRNQ5BIV9 151 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 MROH9Q5TGP6 573 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 SLC35E4Q6ICL7 350 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 MEPCEQ7L2J0 689 aaKnown RBP5.35□□□□□ -1.55
CD44-237ENST00000534082 RNF130Q86XS8 419 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 MUC20Q8N307 709 aaPredicted RBP5.35□□□□□ -1.55
CD44-237ENST00000534082 ARFGAP2Q8N6H7 521 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 PIK3C3Q8NEB9 887 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 SLC30A7Q8NEW0 376 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 OR56A1Q8NGH5 318 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 PBKQ96KB5 322 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 OR7D2Q96RA2 312 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 KCNA7Q96RP8 456 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 PRPF18Q99633 342 aaKnown RBP5.35□□□□□ -1.55
CD44-237ENST00000534082 NUDT16L1Q9BRJ7 211 aaKnown RBP5.35□□□□□ -1.55
CD44-237ENST00000534082 TAPBPLQ9BX59 468 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 C1QTNF3Q9BXJ4 246 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 TRIM15Q9C019 465 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 DPAGT1Q9H3H5 408 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 REEP4Q9H6H4 257 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 CDH20Q9HBT6 801 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 LZTFL1Q9NQ48 299 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 EXOSC3Q9NQT5 275 aaKnown RBP5.35□□□□□ -1.55
CD44-237ENST00000534082 SH3BP4Q9P0V3 963 aa5.35□□□□□ -1.55
CD44-237ENST00000534082 RPUSD1Q9UJJ7 312 aaKnown RBP5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms