RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 Q8NBF4 154 aa3□□□□□ -1.93
CD44-235ENST00000532339 AQP11Q8NBQ7 271 aa3□□□□□ -1.93
CD44-235ENST00000532339 MDS2Q8NDY4 140 aa3□□□□□ -1.93
CD44-235ENST00000532339 IPMKQ8NFU5 416 aa3□□□□□ -1.93
CD44-235ENST00000532339 OR6K2Q8NGY2 324 aa3□□□□□ -1.93
CD44-235ENST00000532339 OR4F5Q8NH21 305 aa3□□□□□ -1.93
CD44-235ENST00000532339 ISG20Q96AZ6 181 aaKnown RBP3□□□□□ -1.93
CD44-235ENST00000532339 SERPINB11Q96P15 392 aa3□□□□□ -1.93
CD44-235ENST00000532339 ALKBH3Q96Q83 286 aaPredicted RBP3□□□□□ -1.93
CD44-235ENST00000532339 ULBP1Q9BZM6 244 aa3□□□□□ -1.93
CD44-235ENST00000532339 PARLQ9H300 379 aa3□□□□□ -1.93
CD44-235ENST00000532339 WDR54Q9H977 334 aa3□□□□□ -1.93
CD44-235ENST00000532339 SAMSN1Q9NSI8 373 aaKnown RBP3□□□□□ -1.93
CD44-235ENST00000532339 NDE1Q9NXR1 346 aa3□□□□□ -1.93
CD44-235ENST00000532339 C6orf203Q9P0P8 240 aaPredicted RBP3□□□□□ -1.93
CD44-235ENST00000532339 P2RX2Q9UBL9 471 aa3□□□□□ -1.93
CD44-235ENST00000532339 ZNF629Q9UEG4 869 aaPredicted RBP3□□□□□ -1.93
CD44-235ENST00000532339 BCAP29Q9UHQ4 241 aa3□□□□□ -1.93
CD44-235ENST00000532339 XPO7Q9UIA9 1087 aaKnown RBP3□□□□□ -1.93
CD44-235ENST00000532339 NAP1L2Q9ULW6 460 aaPredicted RBP3□□□□□ -1.93
CD44-235ENST00000532339 FOXJ3Q9UPW0 622 aa3□□□□□ -1.93
CD44-235ENST00000532339 MALRD1Q5VYJ5 2156 aa3□□□□□ -1.93
CD44-235ENST00000532339 MED12Q93074 2177 aa3□□□□□ -1.93
CD44-235ENST00000532339 A0A1B0GWJ7 208 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 DEFB108AA8MXU0 73 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 TMCO5BA8MYB1 307 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 FBP2O00757 339 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 BCKDKO14874 412 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 VPS26AO75436 327 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 CLDN11O75508 207 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 DEXIO95424 95 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 APOEP02649 317 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 RHOCP08134 193 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 RRASP10301 218 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 CD1DP15813 335 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 TEAD1P28347 426 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 ADRA1AP35348 466 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 VSX2P58304 361 aaPredicted RBP2.99□□□□□ -1.93
CD44-235ENST00000532339 ERVK-16P61578 105 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 PAX8Q06710 450 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 ZNF33BQ06732 778 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 HAGHQ16775 308 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 NKAIN1Q4KMZ8 207 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 DDI2Q5TDH0 399 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 WDR25Q64LD2 544 aaPredicted RBP2.99□□□□□ -1.93
CD44-235ENST00000532339 SLC25A24Q6NUK1 477 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 GDPGP1Q6ZNW5 385 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 ERASQ7Z444 233 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 GOLGA7Q7Z5G4 137 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 ZNF573Q86YE8 665 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 ARFGAP2Q8N6H7 521 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 OR2AP1Q8NGE2 309 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 OR52B6Q8NGF0 335 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 OR1K1Q8NGR3 316 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.99□□□□□ -1.93
CD44-235ENST00000532339 SLC25A36Q96CQ1 311 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 TRIM44Q96DX7 344 aaPredicted RBP2.99□□□□□ -1.93
CD44-235ENST00000532339 PIK3IP1Q96FE7 263 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 BTN2A3PQ96KV6 586 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 RPRD1AQ96P16 312 aaPredicted RBP2.99□□□□□ -1.93
CD44-235ENST00000532339 CCT8L2Q96SF2 557 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 TBX15Q96SF7 602 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 HES7Q9BYE0 225 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 TM6SF2Q9BZW4 377 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 WDR41Q9HAD4 459 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 PARVGQ9HBI0 331 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 HMGXB4Q9UGU5 601 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 MFHAS1Q9Y4C4 1052 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 PLECQ15149 4684 aaKnown RBP2.99□□□□□ -1.93
CD44-235ENST00000532339 RAI1Q7Z5J4 1906 aaPredicted RBP2.99□□□□□ -1.93
CD44-235ENST00000532339 DNAH3Q8TD57 4116 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 DNAJC13O75165 2243 aa2.99□□□□□ -1.93
CD44-235ENST00000532339 DNAH7Q8WXX0 4024 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 PLCE1Q9P212 2302 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 ANKRD36A6QL64 1941 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 A0A0A6YYD4 124 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 NSG1A0A0A6YYJ2 146 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 CXorf51AA0A1B0GTR3 108 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 GOLGA8IPA6NC78 632 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 GOLGA8JA6NMD2 632 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 ANKRD30BLA7E2S9 258 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 NPIPA2E9PIF3 369 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 GOLGA8SH3BPF8 625 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 K7EQG2 157 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 SGK494L7N484 410 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 TRAFD1O14545 582 aaPredicted RBP2.98□□□□□ -1.93
CD44-235ENST00000532339 ANGPT2O15123 496 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 ASS1P00966 412 aaKnown RBP2.98□□□□□ -1.93
CD44-235ENST00000532339 CCDC159P0C7I6 412 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 SLC25A16P16260 332 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 TPSB2P20231 275 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 NSG1P42857 185 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 EFNA3P52797 238 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 CDH4P55283 916 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 MYL6P60660 151 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 EIF4EBP2Q13542 120 aaPredicted RBP2.98□□□□□ -1.93
CD44-235ENST00000532339 TPSAB1Q15661 275 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 ECSCRQ19T08 205 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 KRTAP13-3Q3SY46 172 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 UNC50Q53HI1 259 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms