RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 NANSQ9NR45 359 aa12.72□□□□□ -0.37
VPS28-215ENST00000531924 A0A1W2PPW3 197 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 TMEM129A0AVI4 362 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 KPNA4O00629 521 aaPredicted RBP12.71□□□□□ -0.37
VPS28-215ENST00000531924 CD247P20963 164 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 GLRXP35754 106 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 SELENOVP59797 346 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 DUSP7Q16829 419 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 CR1LQ2VPA4 569 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 REP15Q6BDI9 236 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 SLC35D2Q76EJ3 337 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 ZNF627Q7L945 461 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 PTOV1Q86YD1 416 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 LINC01356Q8N9X3 169 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 OR6T1Q8NGN1 323 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 OR6X1Q8NH79 312 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 ZNF566Q969W8 418 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 CGREF1Q99674 301 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 SYT3Q9BQG1 590 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 WFDC6Q9BQY6 131 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 MRPL37Q9BZE1 423 aaKnown RBP12.71□□□□□ -0.37
VPS28-215ENST00000531924 RNF121Q9H920 327 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 GLTPQ9NZD2 209 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 DUSP13Q9UII6 198 aa12.71□□□□□ -0.37
VPS28-215ENST00000531924 ARFGEF3Q5TH69 2177 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 TRAPPC13A5PLN9 417 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 TACSTD2P09758 323 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 OR8G3PP0DMU2 310 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 ZNF35P13682 527 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 ZNF14P17017 642 aaPredicted RBP12.7□□□□□ -0.38
VPS28-215ENST00000531924 TCN1P20061 433 aaPredicted RBP12.7□□□□□ -0.38
VPS28-215ENST00000531924 PCMT1P22061 227 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 PCBP3P57721 371 aaKnown RBP12.7□□□□□ -0.38
VPS28-215ENST00000531924 RAB39AQ14964 217 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 ZNF74Q16587 644 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 TMEM53Q6P2H8 277 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 DPP10Q8N608 796 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 ADAMTS16Q8TE57 1224 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 RASSF5Q8WWW0 418 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 SLC25A44Q96H78 314 aaPredicted RBP12.7□□□□□ -0.38
VPS28-215ENST00000531924 MPP4Q96JB8 637 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 SLC7A8Q9UHI5 535 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 TMEFF2Q9UIK5 374 aaPredicted RBP12.7□□□□□ -0.38
VPS28-215ENST00000531924 GPR160Q9UJ42 338 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 ZNF229Q9UJW7 825 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 SLC7A7Q9UM01 511 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 FZR1Q9UM11 496 aa12.7□□□□□ -0.38
VPS28-215ENST00000531924 SLC22A23A1A5C7 686 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 HMGB1P1B2RPK0 211 aaPredicted RBP12.69□□□□□ -0.38
VPS28-215ENST00000531924 LYNX1G3V0Z9 82 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 LILRA1O75019 489 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 BCL10O95999 233 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 SERPINA5P05154 406 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 PATE4P0C8F1 98 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 LYNX1P0DP58 116 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 PCGF2P35227 344 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 ALDH3B1P43353 468 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 CLRN1P58418 232 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 ZP4Q12836 540 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 CCNIQ14094 377 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 SELPLGQ14242 412 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 NKPD1Q17RQ9 610 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 KRTAP24-1Q3LI83 254 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 TTMPQ5BVD1 217 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 LINC00114Q6XXX2 140 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 NANOGNBQ7Z5D8 188 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 RBM45Q8IUH3 476 aaKnown RBP12.69□□□□□ -0.38
VPS28-215ENST00000531924 SKA3Q8IX90 412 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 SLC22A24Q8N4F4 322 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 GPR32P1Q8NGA4 272 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 OR10A6Q8NH74 314 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 TSPEARQ8WU66 669 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 TMEM54Q969K7 222 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 MAGEB18Q96M61 343 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 SH3GL1Q99961 368 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 C19orf24Q9BVV8 132 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 SLC19A3Q9BZV2 496 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 LRMDAQ9H2I8 198 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 CDH20Q9HBT6 801 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 NPHS2Q9NP85 383 aa12.69□□□□□ -0.38
VPS28-215ENST00000531924 ZNF346Q9UL40 294 aaKnown RBP12.69□□□□□ -0.38
VPS28-215ENST00000531924 A0A0G2JND7 137 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 A0A1W2PRG6 482 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 MCIDASD6RGH6 385 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 BLOC1S5-TXNDC5H3BN57 136 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 HAX1O00165 279 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 PTHP01270 115 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 IGHG1P01857 330 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 GPR6P46095 362 aaPredicted RBP12.68□□□□□ -0.38
VPS28-215ENST00000531924 ZNF84P51523 738 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 PLP2Q04941 152 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 RIN1Q13671 783 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 CYLC2Q14093 348 aaPredicted RBP12.68□□□□□ -0.38
VPS28-215ENST00000531924 MELKQ14680 651 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 TRIP10Q15642 601 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 NPTX1Q15818 432 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 SLC36A2Q495M3 483 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 NHLRC1Q6VVB1 395 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 WDR88Q6ZMY6 472 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 HDDC2Q7Z4H3 204 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms