RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 LEF1Q9UJU2 399 aaPredicted RBP9.76□□□□□ -0.85
VPS28-214ENST00000531032 SLC13A4Q9UKG4 626 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 FBXL3Q9UKT7 428 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 ANGPT4Q9Y264 503 aa9.76□□□□□ -0.85
VPS28-214ENST00000531032 B4DSR2 109 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 M0R3H8 397 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 ANGPT2O15123 496 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 TCF21O43680 179 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 CHP2O43745 196 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 RAB36O95755 333 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 TROVE2P10155 538 aaKnown RBP eCLIP9.75□□□□□ -0.85
VPS28-214ENST00000531032 PCMT1P22061 227 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 ALDH3B1P43353 468 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 CSNK1A1P48729 337 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 BIDP55957 195 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 RAB1AP62820 205 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 MRPS11P82912 194 aaKnown RBP9.75□□□□□ -0.85
VPS28-214ENST00000531032 CCNIQ14094 377 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 HSP90B2PQ58FF3 399 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 GKAP1Q5VSY0 366 aaPredicted RBP9.75□□□□□ -0.85
VPS28-214ENST00000531032 DLEU7Q6UYE1 221 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 WDR88Q6ZMY6 472 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 PIWIL3Q7Z3Z3 882 aaKnown RBP9.75□□□□□ -0.85
VPS28-214ENST00000531032 DHDDSQ86SQ9 333 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 PTOV1Q86YD1 416 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 ZNF584Q8IVC4 421 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 C10orf53Q8N6V4 93 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 SMYD1Q8NB12 490 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 OR6X1Q8NH79 312 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 TMEM54Q969K7 222 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 MCHR1Q99705 422 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 ARHGDIGQ99819 225 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 SYT3Q9BQG1 590 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 SIKE1Q9BRV8 207 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 RACGAP1Q9H0H5 632 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 MYEF2Q9P2K5 600 aaKnown RBP9.75□□□□□ -0.85
VPS28-214ENST00000531032 SLC7A8Q9UHI5 535 aa9.75□□□□□ -0.85
VPS28-214ENST00000531032 C11orf98E9PRG8 122 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 HAX1O00165 279 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 EDF1O60869 148 aaKnown RBP9.74□□□□□ -0.85
VPS28-214ENST00000531032 SERPINI2O75830 405 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 SASH3O75995 380 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 HPXP02790 462 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 SERPINA5P05154 406 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 ADORA3P0DMS8 318 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 ACHEP22303 614 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 SRP14P37108 136 aaKnown RBP9.74□□□□□ -0.85
VPS28-214ENST00000531032 GPR6P46095 362 aaPredicted RBP9.74□□□□□ -0.85
VPS28-214ENST00000531032 SEC24CP53992 1094 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 GALK2Q01415 458 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 ZP4Q12836 540 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 RAB39AQ14964 217 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 MAD2L1BPQ15013 274 aaPredicted RBP9.74□□□□□ -0.85
VPS28-214ENST00000531032 NPTX1Q15818 432 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 ZNF74Q16587 644 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 DUSP7Q16829 419 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 RUNDC3AQ59EK9 446 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 REP15Q6BDI9 236 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 DEF8Q6ZN54 512 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 SLC35D2Q76EJ3 337 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 LRP11Q86VZ4 500 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 SKA3Q8IX90 412 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 SLC22A24Q8N4F4 322 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 C11orf65Q8NCR3 313 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 GPR32P1Q8NGA4 272 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 OR6T1Q8NGN1 323 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 FGFBP3Q8TAT2 258 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 STON2Q8WXE9 905 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 RDH5Q92781 318 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 ZNF446Q9NWS9 450 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 TAS2R5Q9NYW4 299 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 GLTPQ9NZD2 209 aa9.74□□□□□ -0.85
VPS28-214ENST00000531032 ENTPD5O75356 428 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 RP2O75695 350 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 NCR1O76036 304 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 OR6A2O95222 327 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 LYPD3O95274 346 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 TFP02787 698 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 OPN1SWP03999 348 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 THY1P04216 161 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 PATE4P0C8F1 98 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 OR8G3PP0DMU2 310 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 SAGP10523 405 aaPredicted RBP9.73□□□□□ -0.85
VPS28-214ENST00000531032 ITGA2P17301 1181 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 TCN1P20061 433 aaPredicted RBP9.73□□□□□ -0.85
VPS28-214ENST00000531032 COL8A2P25067 703 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 LSP1P33241 339 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 TMEM33P57088 247 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 RBBP4Q09028 425 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 NFYCQ13952 458 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 CYP51A1Q16850 503 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 ENTPD8Q5MY95 495 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 LRFN4Q6PJG9 635 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 RINLQ6ZS11 566 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 GLCCI1Q86VQ1 547 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 CARM1Q86X55 608 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 MEX3DQ86XN8 651 aaKnown RBP9.73□□□□□ -0.85
VPS28-214ENST00000531032 DPP10Q8N608 796 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 CLDND2Q8NHS1 167 aa9.73□□□□□ -0.85
VPS28-214ENST00000531032 ADAMTS16Q8TE57 1224 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms