RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ARHGDIGQ99819 225 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 OSBPL11Q9BXB4 747 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 STRADBQ9C0K7 418 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 ZNF350Q9GZX5 532 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 GABARAPL1Q9H0R8 117 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 NXF5Q9H1B4 397 aaKnown RBP3.78□□□□□ -1.8
CD44-226ENST00000527889 CDCP1Q9H5V8 836 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 MTHFD2LQ9H903 347 aaPredicted RBP3.78□□□□□ -1.8
CD44-226ENST00000527889 CACYBPQ9HB71 228 aaKnown RBP3.78□□□□□ -1.8
CD44-226ENST00000527889 NRIP3Q9NQ35 241 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 FBXO8Q9NRD0 319 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 THSD1Q9NS62 852 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 ACER3Q9NUN7 267 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 C14orf105Q9NVL8 296 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 SMPD3Q9NY59 655 aaPredicted RBP3.78□□□□□ -1.8
CD44-226ENST00000527889 PRODH2Q9UF12 536 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 CNOT11Q9UKZ1 510 aaKnown RBP3.78□□□□□ -1.8
CD44-226ENST00000527889 RAB26Q9ULW5 256 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 A4GNTQ9UNA3 340 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 SLC9A8Q9Y2E8 581 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 RPH3AQ9Y2J0 694 aaPredicted RBP3.78□□□□□ -1.8
CD44-226ENST00000527889 PTRH2Q9Y3E5 179 aaKnown RBP3.78□□□□□ -1.8
CD44-226ENST00000527889 FAM32AQ9Y421 112 aaKnown RBP3.78□□□□□ -1.8
CD44-226ENST00000527889 OR10H1Q9Y4A9 318 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 DMRT1Q9Y5R6 373 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 SPTBN1Q01082 2364 aaKnown RBP3.78□□□□□ -1.8
CD44-226ENST00000527889 ATMQ13315 3056 aa3.78□□□□□ -1.8
CD44-226ENST00000527889 TRBV11-1A0A0K0K1C0 115 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 C2orf92A0A1B0GVN3 265 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 A0A1W2PPW3 197 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 A0A1W2PQ09 198 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 A4D1N5 150 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 TMEM8BA6NDV4 472 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 SAGE2PA6NJ88 616 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 VSTM2BA6NLU5 285 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 MARCH11A6NNE9 402 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 C17orf51A8MQB3 221 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 C9J4A7 227 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 E9PI62 339 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 H0YJX3 145 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 ADAM20O43506 726 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 DENRO43583 198 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 LRP3O75074 770 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 REM1O75628 298 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 STK17BO94768 372 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 CCNB2O95067 398 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 GADD45GO95257 159 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 UTS2O95399 124 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 DIRAS3O95661 229 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 ONECUT2O95948 504 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 AK1P00568 194 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 HPRP00739 348 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 DBIP07108 87 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 KLK3P07288 261 aaPredicted RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 H1F0P07305 194 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 UMODP07911 640 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 CELA2AP08217 269 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 CYC1P08574 325 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 PPP3CBP16298 524 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 IGFBP2P18065 325 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 CFL1P23528 166 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 IGFBP5P24593 272 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 ELAVL4P26378 380 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 EPHA2P29317 976 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 POLR2IP36954 125 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 PIGAP37287 484 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 CAPGP40121 348 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 WNT5AP41221 380 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 PPICP45877 212 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 GSSP48637 474 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 NR0B1P51843 470 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 ZNF136P52737 540 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 TAS2R41P59536 307 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 RPS18P62269 152 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 ADARB1P78563 741 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 E2F1Q01094 437 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 SCN1BQ07699 218 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 MERTKQ12866 999 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 MED21Q13503 144 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 IRF3Q14653 427 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 LARS2Q15031 903 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 EBPQ15125 230 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 TRIP6Q15654 476 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 LIN52Q52LA3 116 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 EIPR1Q53HC9 387 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 ENTPD8Q5MY95 495 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 DCAF12Q5T6F0 453 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 LCE4AQ5TA78 99 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 KDM4DQ6B0I6 523 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 SP5Q6BEB4 398 aaPredicted RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 TCTN3Q6NUS6 607 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 FAHD1Q6P587 224 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 METAP1DQ6UB28 335 aaPredicted RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 UGT2A3Q6UWM9 527 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 Q6ZPB1 254 aaPredicted RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 SLC29A4Q7RTT9 530 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 TIPARPQ7Z3E1 657 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 CPEB2Q7Z5Q1 589 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 CYP4Z1Q86W10 505 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms