RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 CACNG2Q9Y698 323 aa12.2□□□□□ -0.46
CPSF1-201ENST00000526271 VWFP04275 2813 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 A0A0A6YYJ9 748 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 CCDC22O60826 627 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 LYPD3O95274 346 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 THY1P04216 161 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 CD79AP11912 226 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 CAPZA2P47755 286 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 PTDSS1P48651 473 aaKnown RBP12.19□□□□□ -0.46
CPSF1-201ENST00000526271 ANXA11P50995 505 aaKnown RBP12.19□□□□□ -0.46
CPSF1-201ENST00000526271 CAMK2DQ13557 499 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 LARS2Q15031 903 aaKnown RBP12.19□□□□□ -0.46
CPSF1-201ENST00000526271 GSG1Q2KHT4 349 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 GKAP1Q5VSY0 366 aaPredicted RBP12.19□□□□□ -0.46
CPSF1-201ENST00000526271 SLC2A7Q6PXP3 512 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 PEG10Q86TG7 708 aaKnown RBP12.19□□□□□ -0.46
CPSF1-201ENST00000526271 FUNDC1Q8IVP5 155 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 ZDHHC22Q8N966 263 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 PIK3C3Q8NEB9 887 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 IL17RDQ8NFM7 739 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 RDH5Q92781 318 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 SLC38A4Q969I6 547 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 SLC35B4Q969S0 331 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 MYLK2Q9H1R3 596 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 C12orf10Q9HB07 376 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 MRGBPQ9NV56 204 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 CALML5Q9NZT1 146 aa12.19□□□□□ -0.46
CPSF1-201ENST00000526271 FBXO9Q9UK97 447 aaPredicted RBP12.19□□□□□ -0.46
CPSF1-201ENST00000526271 TRAV36DV7A0A075B6V5 113 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 A0A0B4J2E0 115 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 A0A1B0GX12 115 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 FSHBP01225 129 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 CCL2P13500 99 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 ADRA2CP18825 462 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 STX1BP61266 288 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 C1DQ13901 141 aaKnown RBP12.18□□□□□ -0.46
CPSF1-201ENST00000526271 AVPI1Q5T686 147 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 BLOC1S3Q6QNY0 202 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 CCDC36Q8IYA8 594 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 BHLHE22Q8NFJ8 381 aaPredicted RBP12.18□□□□□ -0.46
CPSF1-201ENST00000526271 BCAS4Q8TDM0 211 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 FAM216AQ8WUB2 273 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 LRR1Q96L50 414 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 FOXB1Q99853 325 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 MOV10Q9HCE1 1003 aaKnown RBP12.18□□□□□ -0.46
CPSF1-201ENST00000526271 OPN4Q9UHM6 478 aa12.18□□□□□ -0.46
CPSF1-201ENST00000526271 IGLV3-9A0A075B6K5 115 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 TRBV5-3A0A0A0MS03 114 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 PLPP3O14495 311 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 SLC22A2O15244 555 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 IL6P05231 212 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 ARAFP10398 606 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 EPHA1P21709 976 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 PRKAR1BP31321 381 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 POLR2JP52435 117 aaKnown RBP12.17□□□□□ -0.46
CPSF1-201ENST00000526271 RAB1AP62820 205 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 LRRC74AQ0VAA2 488 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 AGKQ53H12 422 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 SPRNQ5BIV9 151 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 ALG10BQ5I7T1 473 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 LRFN4Q6PJG9 635 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 UEVLDQ8IX04 471 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 NFKBIDQ8NI38 313 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 TMEM54Q969K7 222 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 ZBTB18Q99592 522 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 MS4A5Q9H3V2 200 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 MRPL39Q9NYK5 338 aaKnown RBP12.17□□□□□ -0.46
CPSF1-201ENST00000526271 CCDC167Q9P0B6 97 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 IFT52Q9Y366 437 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 NOTCH1P46531 2555 aa12.17□□□□□ -0.46
CPSF1-201ENST00000526271 CLIC1O00299 241 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 NDUFAB1O14561 156 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 PPIHO43447 177 aaKnown RBP12.16□□□□□ -0.46
CPSF1-201ENST00000526271 PLPP2O43688 288 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 OR2T1O43869 369 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 CDC14BO60729 498 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 TFP02787 698 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 CDH12P55289 794 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 TMEM33P57088 247 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 MRPS11P82912 194 aaKnown RBP12.16□□□□□ -0.46
CPSF1-201ENST00000526271 KLF10Q13118 480 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 OR1Q1Q15612 314 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 NPTX1Q15818 432 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 AWAT1Q58HT5 328 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 DHRS4L2Q6PKH6 230 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 LINC00114Q6XXX2 140 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 MSANTD1Q6ZTZ1 278 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 USP43Q70EL4 1123 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 SCAIQ8N9R8 606 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 CCDC197Q8NCU1 140 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 OR4D11Q8NGI4 311 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 OR6S1Q8NH40 331 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 OR51F2Q8NH61 342 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 BBS10Q8TAM1 723 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 TSPEARQ8WU66 669 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 ITCHQ96J02 903 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 SLC6A7Q99884 636 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 PCDHB10Q9UN67 800 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 ZNF232Q9UNY5 417 aa12.16□□□□□ -0.46
CPSF1-201ENST00000526271 DCTN3O75935 186 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms