RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SLC39A8Q9C0K1 460 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 POLR3FQ9H1D9 316 aaPredicted RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 PPA2Q9H2U2 334 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 LRRN3Q9H3W5 708 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 GOLPH3Q9H4A6 298 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 SMYD3Q9H7B4 428 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 KAT8Q9H7Z6 458 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 CCNB1IP1Q9NPC3 277 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 ZC4H2Q9NQZ6 224 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 MRPL17Q9NRX2 175 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 NKIRAS1Q9NYS0 192 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 TAS2R1Q9NYW7 299 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 MAT2BQ9NZL9 334 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 MYEF2Q9P2K5 600 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 ABCD2Q9UBJ2 740 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 ADAM28Q9UKQ2 775 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 RPL26L1Q9UNX3 145 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 ARL2BPQ9Y2Y0 163 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 SNX24Q9Y343 169 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 RHBDD3Q9Y3P4 386 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.93□□□□□ -1.94
CD44-217ENST00000525348 EFCAB6Q5THR3 1501 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 ADGRL3Q9HAR2 1447 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 ANKRD50Q9ULJ7 1429 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 MROH7-TTC4A0A0A0MT08 1334 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 ABCC4O15439 1325 aa2.93□□□□□ -1.94
CD44-217ENST00000525348 RREB1Q92766 1687 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 NRXN1Q9ULB1 1477 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 TMEM2Q9UHN6 1383 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 A0A0A6YYC8 382 aaPredicted RBP2.92□□□□□ -1.94
CD44-217ENST00000525348 FAM230AA0A1W2PPH8 454 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 FAM168BA1KXE4 195 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 FAM92AA1XBS5 289 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 FAM149AA5PLN7 773 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 LINC00862A6NCI5 91 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 GMNCA6NCL1 334 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 OR5H15A6NDH6 313 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 METTL15A6NJ78 407 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 OR52A4PA6NMU1 304 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 MEI4A8MW99 385 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 I3L1I5 382 aaPredicted RBP2.92□□□□□ -1.94
CD44-217ENST00000525348 ST8SIA3O43173 380 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 GPAA1O43292 621 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 ZNF264O43296 627 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 SGCEO43556 437 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 B4GALT2O60909 372 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 AKAP3O75969 853 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 LYPLA2O95372 231 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 SNAI1O95863 264 aaPredicted RBP2.92□□□□□ -1.94
CD44-217ENST00000525348 F10P00742 488 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 PCCBP05166 539 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 RBP1P09455 135 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 PAEPP09466 180 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 NBEAP1P0C6P0 100 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 ZDHHC11BP0C7U3 371 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 THRBP10828 461 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 MCF2P10911 925 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 MBL2P11226 248 aaPredicted RBP2.92□□□□□ -1.94
CD44-217ENST00000525348 CD36P16671 472 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 ZNF18P17022 549 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 ZNF7P17097 686 aaPredicted RBP2.92□□□□□ -1.94
CD44-217ENST00000525348 ELK4P28324 431 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 GJB2P29033 226 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 CCR7P32248 378 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 FOXN2P32314 431 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 CD80P33681 288 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 CEACAM6P40199 344 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 VHLP40337 213 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 CSKP41240 450 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 MAP3K8P41279 467 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 YAP1P46937 504 aaKnown RBP2.92□□□□□ -1.94
CD44-217ENST00000525348 CDK9P50750 372 aaKnown RBP2.92□□□□□ -1.94
CD44-217ENST00000525348 NDST1P52848 882 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 RPL26P61254 145 aaKnown RBP2.92□□□□□ -1.94
CD44-217ENST00000525348 NUTF2P61970 127 aaKnown RBP2.92□□□□□ -1.94
CD44-217ENST00000525348 FKBP1BP68106 108 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 REEP5Q00765 189 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 SELPLGQ14242 412 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 GAMTQ14353 236 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 MESDQ14696 234 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 GANABQ14697 944 aaKnown RBP2.92□□□□□ -1.94
CD44-217ENST00000525348 C16orf72Q14CZ0 275 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 EMC2Q15006 297 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 ZBTB6Q15916 424 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 PSMD5Q16401 504 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 PDK4Q16654 411 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 GOLGA7BQ2TAP0 167 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 SLC36A3Q495N2 470 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 KLHL12Q53G59 568 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 OR2B11Q5JQS5 317 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 LDLRAP1Q5SW96 308 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 SEL1L2Q5TEA6 688 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 NKAIN2Q5VXU1 208 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 LRRC66Q68CR7 880 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 ZNF776Q68DI1 518 aaPredicted RBP2.92□□□□□ -1.94
CD44-217ENST00000525348 RPL13AP3Q6NVV1 102 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 SPESP1Q6UW49 350 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 NHLRC1Q6VVB1 395 aa2.92□□□□□ -1.94
CD44-217ENST00000525348 RBM43Q6ZSC3 357 aaKnown RBP2.92□□□□□ -1.94
CD44-217ENST00000525348 ASRGL1Q7L266 308 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms