RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 FBXL2Q9UKC9 423 aa6.88□□□□□ -1.31
HDAC3-216ENST00000523088 NEUROG3Q9Y4Z2 214 aa6.88□□□□□ -1.31
HDAC3-216ENST00000523088 HS3ST4Q9Y661 456 aa6.88□□□□□ -1.31
HDAC3-216ENST00000523088 CHD8Q9HCK8 2581 aa6.88□□□□□ -1.31
HDAC3-216ENST00000523088 KNL1Q8NG31 2342 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 A0A087WV48 116 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 A0A1B0GTI1 187 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 A0A1W2PQU0 124 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 NPEPPSL1A6NEC2 478 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 ANXA2P2A6NMY6 339 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 D6RAR5 112 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 TRAPPC2LH3BP13 241 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 ACOT7O00154 380 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 C1QCP02747 245 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 SLC35G4P0C7Q5 338 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 RCC1P18754 421 aaPredicted RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 SLC6A4P31645 630 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 DLSTP36957 453 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 OR3A1P47881 315 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 CSNK1A1P48729 337 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 BIDP55957 195 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 MAXP61244 160 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 RPS14P62263 151 aaKnown RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 MS4A2Q01362 244 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 SLC6A3Q01959 620 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 SLBPQ14493 270 aaKnown RBP eCLIP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 ST3GAL2Q16842 350 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 PTPRNQ16849 979 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 ZXDCQ2QGD7 858 aaPredicted RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 AGKQ53H12 422 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 FNBP1LQ5T0N5 605 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 SLC35F1Q5T1Q4 408 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 LGSNQ5TDP6 509 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 BROXQ5VW32 411 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 B3GNTL1Q67FW5 361 aaPredicted RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 FAM45BPQ6NSW5 357 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 UNQ9370/PRO34162Q6UXP9 181 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 CD300LDQ6UXZ3 194 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 NHLRC1Q6VVB1 395 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 STRADAQ7RTN6 431 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 BOD1L2Q8IYS8 172 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 ZCCHC9Q8N567 271 aaKnown RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 DEFB124Q8NES8 71 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 OR52B4Q8NGK2 314 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 OR8D4Q8NGM9 314 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 OR10K1Q8NGX5 313 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 FAM45AQ8TCE6 357 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 BRIX1Q8TDN6 353 aaKnown RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 CYB5D2Q8WUJ1 264 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 UBTD2Q8WUN7 234 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 ZC3HAV1LQ96H79 300 aaKnown RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 PEX11GQ96HA9 241 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 TSSK3Q96PN8 268 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 FYTTD1Q96QD9 318 aaKnown RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 GFM1Q96RP9 751 aaKnown RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 WDR83Q9BRX9 315 aaKnown RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 SNHG12Q9BXW3 62 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 SIK2Q9H0K1 926 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 PCDHAC1Q9H158 963 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 MIR1-1HGQ9H1L0 117 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 LYRM4Q9HD34 91 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 SLCO1B3Q9NPD5 702 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 PRSS16Q9NQE7 514 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 MIEF1Q9NQG6 463 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 PLEKHJ1Q9NW61 149 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 GAR1Q9NY12 217 aaKnown RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 SCN3BQ9NY72 215 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 FOXJ2Q9P0K8 574 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 DKK4Q9UBT3 224 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 HSF4Q9ULV5 492 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 LHX6Q9UPM6 363 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 MRPS33Q9Y291 106 aaKnown RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 TMEM131Q92545 1883 aa6.87□□□□□ -1.31
HDAC3-216ENST00000523088 COL5A1P20908 1838 aaPredicted RBP6.87□□□□□ -1.31
HDAC3-216ENST00000523088 TGIF2-C20orf24A0A0A6YYL0 155 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 OR6C68A6NDL8 312 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 CXorf65A6NEN9 183 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 ANTXRLA6NF34 631 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 FAM187AA6NFU0 413 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 KIAA1324LA8MWY0 1029 aaPredicted RBP6.86□□□□□ -1.31
HDAC3-216ENST00000523088 C9JVG2 144 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 EI24O14681 340 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 DXOO77932 396 aaKnown RBP6.86□□□□□ -1.31
HDAC3-216ENST00000523088 APOC3P02656 99 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 CCNYL3P0C7X3 344 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 PNMTP11086 282 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 NID1P14543 1247 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 GOT1P17174 413 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 MGAT1P26572 445 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 ITPKBP27987 946 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 CD70P32970 193 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 RRAS2P62070 204 aaPredicted RBP6.86□□□□□ -1.31
HDAC3-216ENST00000523088 RPS24P62847 133 aaKnown RBP6.86□□□□□ -1.31
HDAC3-216ENST00000523088 EIF5AP63241 154 aaKnown RBP6.86□□□□□ -1.31
HDAC3-216ENST00000523088 FOXC1Q12948 553 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 UBE2V1Q13404 147 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 CST6Q15828 149 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 SCGB2B2Q4G0G5 96 aa6.86□□□□□ -1.31
HDAC3-216ENST00000523088 SLC22A6Q4U2R8 563 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms