RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 OMA1Q96E52 524 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 JSRP1Q96MG2 331 aaPredicted RBP6.12□□□□□ -1.43
SDCBP-208ENST00000520228 RILPQ96NA2 401 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 COL21A1Q96P44 957 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 ANGPTL4Q9BY76 406 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 TTTY12Q9BZ98 90 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 DPY30Q9C005 99 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 DEFB127Q9H1M4 99 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 KCNK15Q9H427 330 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 WDR55Q9H6Y2 383 aaPredicted RBP6.12□□□□□ -1.43
SDCBP-208ENST00000520228 METTL7AQ9H8H3 244 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 C3orf14Q9HBI5 128 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 INTS9Q9NV88 658 aaKnown RBP6.12□□□□□ -1.43
SDCBP-208ENST00000520228 MRPL15Q9P015 296 aaKnown RBP6.12□□□□□ -1.43
SDCBP-208ENST00000520228 CCDC88CQ9P219 2028 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 HECTD1Q9ULT8 2610 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 BOKQ9UMX3 212 aaPredicted RBP6.12□□□□□ -1.43
SDCBP-208ENST00000520228 OR10H1Q9Y4A9 318 aa6.12□□□□□ -1.43
SDCBP-208ENST00000520228 TNRC6AQ8NDV7 1962 aaKnown RBP6.11□□□□□ -1.43
SDCBP-208ENST00000520228 LOC100509620A0A075B734 347 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 GOLGA8QA0A0J9YX86 632 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 GOLGA8OA6NCC3 632 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 OR6C70A6NIJ9 312 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 PRSS44E7EML9 344 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 GOLGA8NF8WBI6 632 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 SDHDO14521 159 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 CFLARO15519 480 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 EMC8O43402 210 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 ADAM20O43506 726 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 UGT2B11O75310 529 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 TRIM3O75382 744 aaPredicted RBP6.11□□□□□ -1.43
SDCBP-208ENST00000520228 PSMG1O95456 288 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 ABOP16442 354 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 HOXB6P17509 224 aaKnown RBP6.11□□□□□ -1.43
SDCBP-208ENST00000520228 IL12BP29460 328 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 GABRA3P34903 492 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 CASP3P42574 277 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 MAGEA5P43359 124 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 SIRPAP78324 504 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 MRPS22P82650 360 aaKnown RBP6.11□□□□□ -1.43
SDCBP-208ENST00000520228 SLC10A1Q14973 349 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 TOMM20Q15388 145 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 HYAL4Q2M3T9 481 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 ZNF718Q3SXZ3 478 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 VPS26BQ4G0F5 336 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 FAM98BQ52LJ0 330 aaKnown RBP6.11□□□□□ -1.43
SDCBP-208ENST00000520228 CMPK2Q5EBM0 449 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 FAM76BQ5HYJ3 339 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 CAMKMTQ7Z624 323 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 SMIM29Q86T20 159 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 GBGT1Q8N5D6 347 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 TMEM251Q8N6I4 163 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 CDRT4Q8N9R6 151 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 GPR151Q8TDV0 419 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 SSC4DQ8WTU2 575 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 HGDQ93099 445 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 TMCO6Q96DC7 493 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 ZNF597Q96LX8 424 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 MS4A4EQ96PG1 132 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 LMF2Q9BU23 707 aaKnown RBP6.11□□□□□ -1.43
SDCBP-208ENST00000520228 SEMA6AQ9H2E6 1030 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 DENND2DQ9H6A0 471 aaPredicted RBP6.11□□□□□ -1.43
SDCBP-208ENST00000520228 ZDHHC11Q9H8X9 412 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 PROK2Q9HC23 129 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 EQTNQ9NQ60 294 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 ZNF446Q9NWS9 450 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 KLRF1Q9NZS2 232 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 B4GALT7Q9UBV7 327 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 ERRFI1Q9UJM3 462 aaPredicted RBP6.11□□□□□ -1.43
SDCBP-208ENST00000520228 MRTO4Q9UKD2 239 aaKnown RBP6.11□□□□□ -1.43
SDCBP-208ENST00000520228 PROCRQ9UNN8 238 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 NUP210LQ5VU65 1888 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 RELNP78509 3460 aa6.11□□□□□ -1.43
SDCBP-208ENST00000520228 SPENQ96T58 3664 aaKnown RBP6.1□□□□□ -1.43
SDCBP-208ENST00000520228 A0A1B0GTH9 108 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 PRSS51A0A1B0GVH4 220 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 A8MV72 311 aaPredicted RBP6.1□□□□□ -1.43
SDCBP-208ENST00000520228 CCL21O00585 134 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 DVL1O14640 695 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 TSPAN2O60636 221 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 DIAPH2O60879 1101 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 ICOSLGO75144 302 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 TRAPPC6AO75865 159 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 C6orf47O95873 294 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 ALOX5P09917 674 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 S100A3P33764 101 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 CA7P43166 264 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 RFX3P48380 749 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 CCT3P49368 545 aaKnown RBP6.1□□□□□ -1.43
SDCBP-208ENST00000520228 PSMD4P55036 377 aaKnown RBP6.1□□□□□ -1.43
SDCBP-208ENST00000520228 NME5P56597 212 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 ARL16Q0P5N6 197 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 GAGE5Q13069 117 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 GAGE6Q13070 117 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 MELKQ14680 651 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 C3AR1Q16581 482 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 KLHL22Q53GT1 634 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 ANXA8L1Q5VT79 327 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 TIGD3Q6B0B8 471 aa6.1□□□□□ -1.43
SDCBP-208ENST00000520228 OR4F3Q6IEY1 312 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms