RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MELKQ14680 651 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 PPA1Q15181 289 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 TAB1Q15750 504 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 CEACAM16Q2WEN9 425 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 BEX5Q5H9J7 111 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 C9orf135Q5VTT2 229 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 GPR139Q6DWJ6 353 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 PGBD2Q6P3X8 592 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 SMARCD3Q6STE5 483 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 KLHL24Q6TFL4 600 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 DPY19L2P2Q6ZN68 376 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 LINGO2Q7L985 606 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 WFDC8Q8IUA0 241 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 CCDC36Q8IYA8 594 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 OR1K1Q8NGR3 316 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 SLCO4A1Q96BD0 722 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 DUS3LQ96G46 650 aaKnown RBP12.53□□□□□ -0.4
NUP54-216ENST00000514901 RAB3IPQ96QF0 476 aaPredicted RBP12.53□□□□□ -0.4
NUP54-216ENST00000514901 GPX7Q96SL4 187 aaPredicted RBP12.53□□□□□ -0.4
NUP54-216ENST00000514901 ALG12Q9BV10 488 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 POLDIP3Q9BY77 421 aaKnown RBP12.53□□□□□ -0.4
NUP54-216ENST00000514901 MRPL13Q9BYD1 178 aaKnown RBP12.53□□□□□ -0.4
NUP54-216ENST00000514901 MOV10Q9HCE1 1003 aaKnown RBP12.53□□□□□ -0.4
NUP54-216ENST00000514901 SLC17A5Q9NRA2 495 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 ARMC1Q9NVT9 282 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 ZNF346Q9UL40 294 aaKnown RBP12.53□□□□□ -0.4
NUP54-216ENST00000514901 MGAT4BQ9UQ53 548 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 POFUT2Q9Y2G5 429 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 AMDHD2Q9Y303 409 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 MAGED1Q9Y5V3 778 aaPredicted RBP12.53□□□□□ -0.4
NUP54-216ENST00000514901 U3KQV3 271 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 ROS1P08922 2347 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 APCP25054 2843 aa12.52□□□□□ -0.4
NUP54-216ENST00000514901 CADP27708 2225 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 ARRDC5A6NEK1 342 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 ZNF99A8MXY4 864 aaPredicted RBP12.52□□□□□ -0.41
NUP54-216ENST00000514901 AHCYL1O43865 530 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 DEAF1O75398 565 aaPredicted RBP12.52□□□□□ -0.41
NUP54-216ENST00000514901 TRMUO75648 421 aaKnown RBP12.52□□□□□ -0.41
NUP54-216ENST00000514901 WNT11O96014 354 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 PRF1P14222 555 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 CDH2P19022 906 aaPredicted RBP12.52□□□□□ -0.41
NUP54-216ENST00000514901 GSTM3P21266 225 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 ACVR1BP36896 505 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 ARHGDIAP52565 204 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 ARF1P84077 181 aaKnown RBP12.52□□□□□ -0.41
NUP54-216ENST00000514901 GABPB1Q06547 395 aaPredicted RBP12.52□□□□□ -0.41
NUP54-216ENST00000514901 HIST3H3Q16695 136 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 RFX4Q33E94 735 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 PHYHD1Q5SRE7 291 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 FBXW10Q5XX13 1052 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 ZNF770Q6IQ21 691 aaPredicted RBP12.52□□□□□ -0.41
NUP54-216ENST00000514901 RPL13AP3Q6NVV1 102 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 ARIH2OSQ8N7S6 290 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 GIPC3Q8TF64 312 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 BCL2L2Q92843 193 aaPredicted RBP12.52□□□□□ -0.41
NUP54-216ENST00000514901 UTP4Q969X6 686 aaKnown RBP12.52□□□□□ -0.41
NUP54-216ENST00000514901 RBP7Q96R05 134 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 GPA33Q99795 319 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 KATNB1Q9BVA0 655 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 DGCR6LQ9BY27 220 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 GRHPRQ9UBQ7 328 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 AP4S1Q9Y587 144 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 SLC25A15Q9Y619 301 aa12.52□□□□□ -0.41
NUP54-216ENST00000514901 TACC2O95359 2948 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 AKAP6Q13023 2319 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 DEFB108AA8MXU0 73 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 XKRYO14609 159 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 IMPA2O14732 288 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 MGRN1O60291 552 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 E2F6O75461 281 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 GASTP01350 101 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 HRGP04196 525 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 QDPRP09417 244 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 FCGR1AP12314 374 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 APEHP13798 732 aaKnown RBP12.51□□□□□ -0.41
NUP54-216ENST00000514901 SLC6A6P31641 620 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 RPS6KA3P51812 740 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 UBE2NP61088 152 aaKnown RBP12.51□□□□□ -0.41
NUP54-216ENST00000514901 ACTR3P61158 418 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 ERVK-25P63136 954 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 RUNX1T1Q06455 604 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 COX10Q12887 443 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 TOP3AQ13472 1001 aaPredicted RBP12.51□□□□□ -0.41
NUP54-216ENST00000514901 CCNIQ14094 377 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 TBRG1Q3YBR2 411 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 THEM4Q5T1C6 240 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 LRFN4Q6PJG9 635 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 KLHL17Q6TDP4 642 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 ZNF627Q7L945 461 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 IGFN1Q86VF2 1251 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 TMEM200AQ86VY9 491 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 WDFY1Q8IWB7 410 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 WDR31Q8NA23 367 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 AQP11Q8NBQ7 271 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 NOXO1Q8NFA2 376 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 OR10G2Q8NGC3 310 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 OR9Q2Q8NGE9 314 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 ZNF519Q8TB69 540 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 FANK1Q8TC84 345 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms