RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 RLIMQ9NVW2 624 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 CLEC5AQ9NY25 188 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 COA4Q9NYJ1 87 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 MYEF2Q9P2K5 600 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 UPB1Q9UBR1 384 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 LGALS13Q9UHV8 139 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 STARD10Q9Y365 291 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 CLDN16Q9Y5I7 305 aa7.15□□□□□ -1.26
LIMCH1-219ENST00000514096 PLCE1Q9P212 2302 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 A0A087X0M5 115 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 IGHV3-15A0A0B4J1V0 119 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 A0A1B0GX30 115 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 AQP12BA6NM10 295 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 RBBP9O75884 186 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 OPN1SWP03999 348 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 ACSM4P0C7M7 580 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 PF4V1P10720 104 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 S100A2P29034 98 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 EIF1AXP47813 144 aaKnown RBP7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 RAB5BP61020 215 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 GK2Q14410 553 aaPredicted RBP7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 SLC25A24Q6NUK1 477 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 P4HA3Q7Z4N8 544 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 RNF130Q86XS8 419 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 NFAM1Q8NET5 270 aaPredicted RBP7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 OR2M7Q8NG81 312 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 NPRL2Q8WTW4 380 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 ISL2Q96A47 359 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 DUS3LQ96G46 650 aaKnown RBP7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 SORT1Q99523 831 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 C3orf14Q9HBI5 128 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 SLAMF8Q9P0V8 285 aa7.15□□□□□ -1.27
LIMCH1-219ENST00000514096 FCMRO60667 390 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 UGDHO60701 494 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 SOX30O94993 753 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 SIX6O95475 246 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 PLGP00747 810 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 NR2F1P10589 423 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 BMI1P35226 326 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 HLCSP50747 726 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ANXA11P50995 505 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 CCR6P51684 374 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 MPPED2Q15777 294 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 DUSP5Q16690 384 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 DECR1Q16698 335 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ZSWIM7Q19AV6 140 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 RPTNQ6XPR3 784 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 CMIPQ8IY22 773 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ZNF563Q8TA94 476 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 PIWIL2Q8TC59 973 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 NSMAFQ92636 917 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 LRRC46Q96FV0 321 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 LCORQ96JN0 433 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 CITED1Q99966 193 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 KLHDC3Q9BQ90 382 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 CHRNA10Q9GZZ6 450 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 PCDHAC1Q9H158 963 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 CXorf36Q9H7Y0 433 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ZNF230Q9UIE0 474 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 KLF13Q9Y2Y9 288 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 SAMHD1Q9Y3Z3 626 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 HSPE1-MOB4S4R3N1 261 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 COL27A1Q8IZC6 1860 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 IGKV3D-11A0A0A0MRZ8 115 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 CYSRT1A8MQ03 144 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 RFXANKO14593 260 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 SSNA1O43805 119 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ABCB7O75027 752 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ADH7P40394 386 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 SLC1A3P43003 542 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 RBPJQ06330 500 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 PRICKLE4Q2TBC4 344 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ZMAT1Q5H9K5 638 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 RPS26P11Q5JNZ5 115 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 C1orf122Q6ZSJ8 110 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 NAA40Q86UY6 237 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 M1APQ8TC57 530 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ZFAND1Q8TCF1 268 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 TCTEX1D2Q8WW35 142 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 SLAMF9Q96A28 289 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ZG16BQ96DA0 208 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 GINS4Q9BRT9 223 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 SOX7Q9BT81 388 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ELOVL1Q9BW60 279 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ANKRD19PQ9H560 264 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 TAS2R10Q9NYW0 307 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 LIPT1Q9Y234 373 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 WNK2Q9Y3S1 2297 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ARPC5O15511 151 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 RNF13O43567 381 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ALDOCP09972 364 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 PRF1P14222 555 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 ME2P23368 584 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 DCKP27707 260 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 PTPN6P29350 595 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 CDKN2CP42773 168 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 GCGRP47871 477 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 TMBIM6P55061 237 aa7.14□□□□□ -1.27
LIMCH1-219ENST00000514096 DUSP8Q13202 625 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms