RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 Q6ZRG5 221 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 C15orf39Q6ZRI6 1047 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 FCRLAQ7L513 359 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 LRRC25Q8N386 305 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 FAM26EQ8N5C1 309 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 C12orf76Q8N812 135 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 OR56B1Q8NGI3 324 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 OR4K15Q8NH41 348 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 THAP3Q8WTV1 239 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 NOL4LQ96MY1 436 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 NEURL2Q9BR09 285 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 UBQLN3Q9H347 655 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 EXOSC3Q9NQT5 275 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 UBQLN4Q9NRR5 601 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 C1GALT1Q9NS00 363 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 HRASLS2Q9NWW9 162 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 UTRNP46939 3433 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 MAST2Q6P0Q8 1798 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 SLC16A5O15375 505 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 SUSD5O60279 629 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 IRF2P14316 349 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 HOXA9P31269 272 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 HMGCLP35914 325 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 CPOXP36551 454 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 TSFMP43897 325 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 CTXN1P60606 82 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 B2MP61769 119 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 PLAC9Q5JTB6 97 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 NXPE4Q6UWF7 544 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 ZNF704Q6ZNC4 412 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 ERN2Q76MJ5 926 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 SLC46A3Q7Z3Q1 461 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 MDGA2Q7Z553 956 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 OR4F15Q8NGB8 312 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 ADAMTS18Q8TE60 1221 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 PITX2Q99697 317 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 ZNF385DQ9H6B1 395 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 PGAP2Q9UHJ9 254 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 RNF24Q9Y225 148 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 TRABD2BA6NFA1 517 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 AQP7P3A6NL99 342 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 RAB29O14966 203 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 COCHO43405 550 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 ACAA1P09110 424 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 FPR3P25089 353 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 TAS2R46P59540 309 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 WDR5P61964 334 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 SOX4Q06945 474 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 P2RY14Q15391 338 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 C5orf46Q6UWT4 87 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 TMPPEQ6ZT21 453 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 ZNF534Q76KX8 674 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 ADGRG3Q86Y34 549 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 C11orf42Q8N5U0 333 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 INTS12Q96CB8 462 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 GPR78Q96P69 363 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 DHRS4Q9BTZ2 278 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 UCK1Q9HA47 277 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 CDH20Q9HBT6 801 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 TMEM9BQ9NQ34 198 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 SPHK2Q9NRA0 654 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 PRTFDC1Q9NRG1 225 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 PLSCR3Q9NRY6 295 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 GPR45Q9Y5Y3 372 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 PRAMEF26H0Y7S4 382 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 GABRPO00591 440 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 NME2P1O60361 137 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 NCR1O76036 304 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 GYPBP06028 91 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 SDC1P18827 310 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 OR10A3P58181 314 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 HOXC5Q00444 222 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 VEZF1Q14119 521 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 INPP5JQ15735 1006 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 ZNF620Q6ZNG0 422 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 BAP18Q8IXM2 172 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 ACVR1CQ8NER5 493 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 EGLN2Q96KS0 407 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 PRRC1Q96M27 445 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 TRIB3Q96RU7 358 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 G6PC3Q9BUM1 346 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 EHFQ9NZC4 300 aa8.1□□□□□ -1.11
LIMCH1-218ENST00000513024 ELOA3CA0A087WX78 387 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 SIAH2O43255 324 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 CD1EP15812 388 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 JUNBP17275 347 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 TCN2P20062 427 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 HOXA11P31270 313 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 GABRA5P31644 462 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 SGSHP51688 502 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 GAB1Q13480 694 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 ASPGQ86U10 573 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 EID2Q8N6I1 236 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 KIAA1958Q8N8K9 716 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 ZNF845Q96IR2 970 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 TEPSINQ96N21 525 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 OR10A5Q9H207 317 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 SLCO3A1Q9UIG8 710 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 BTNL2Q9UIR0 455 aa8.09□□□□□ -1.11
LIMCH1-218ENST00000513024 PPP1R3CQ9UQK1 317 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms