RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 BAZ2BQ9UIF8 2168 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 SETD1AO15047 1707 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 ABCA6Q8N139 1617 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 LNP1A1A4G5 178 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 K7ERQ8 282 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 FABP4P15090 132 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 SDHAP31040 664 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 RPL29P47914 159 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 MTCP1P56278 107 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 RPL24P83731 157 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 VWA1Q6PCB0 445 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 DPY19L2P2Q6ZN68 376 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 SLC16A14Q7RTX9 510 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 BCL7CQ8WUZ0 217 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 TMEM191AQ9H0A3 160 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 RAB6CQ9H0N0 254 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 VSX1Q9NZR4 365 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF443Q9Y2A4 671 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 SPHKAPQ2M3C7 1700 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 A0A1W2PPQ1 181 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 FAM155AB1AL88 458 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 SGK494L7N484 410 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 DUX1O43812 170 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 TIMP2P16035 220 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 ACHEP22303 614 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 GABRA4P48169 554 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 CCL23P55773 120 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 PRR27Q6MZM9 219 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 CGB2Q6NT52 195 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 NTNG2Q96CW9 530 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 FAAP24Q9BTP7 215 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 MCTS1Q9ULC4 181 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 NUMBLQ9Y6R0 609 aa10.41□□□□□ -0.74
LIMCH1-217ENST00000512946 OR5K3A6NET4 321 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 A6NIN4 97 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 ACOT8O14734 319 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF354AO60765 605 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 HMGN2P05204 90 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 STAG3L3P0CL85 134 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 IHHQ14623 411 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 RAB6CQ53S08 254 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 SAXO2Q658L1 398 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 KDM4DQ6B0I6 523 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 TRNP1Q6NT89 227 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 NPSR1Q6W5P4 371 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF66Q6ZN08 573 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 MOB3CQ70IA8 216 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 FAM71CQ8NEG0 241 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 MRPL38Q96DV4 380 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 HRASLSQ9HDD0 168 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 UBQLN4Q9NRR5 601 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 CLCF1Q9UBD9 225 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 NENFQ9UMX5 172 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 Q9Y3F1 56 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 hCG_1809904A0A1W2PP81 198 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 A0A1W2PPE2 198 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 A0A1W2PR64 198 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 A0A1W2PRV1 198 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 FAM24AA6NFZ4 105 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 DBX1A6NMT0 343 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 NME2P1O60361 137 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 OPN1MWP04001 364 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 OPN1MW2P0DN77 364 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 OPN1MW3P0DN78 364 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 TNFRSF1BP20333 461 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 BPIFB3P59826 476 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 MAT1AQ00266 395 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 OR1Q1Q15612 314 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF626Q68DY1 528 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 RBM23Q86U06 439 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 OR10P1Q8NGE3 313 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 OR51S1Q8NGJ8 323 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 OR52I1Q8NGK6 324 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 DIO2Q92813 273 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 ZFYVE21Q9BQ24 234 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 FAM103A1Q9BTL3 118 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 DUSP21Q9H596 190 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 MARCH4Q9P2E8 410 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 BET1O15155 118 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 PTNP21246 168 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 LIPAP38571 399 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 EVX1P49640 407 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 GATMP50440 423 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 SP3Q02447 781 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 SMN1Q16637 294 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 PSAPL1Q6NUJ1 521 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 PRR22Q8IZ63 422 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 ARFGAP1Q8N6T3 406 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 OR2G2Q8NGZ5 317 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 PDCD1LG2Q9BQ51 273 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 MED16Q9Y2X0 877 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 TRAPPC1Q9Y5R8 145 aa10.4□□□□□ -0.74
LIMCH1-217ENST00000512946 CBX7O95931 251 aa10.4□□□□□ -0.75
LIMCH1-217ENST00000512946 ZNF93P35789 620 aaPredicted RBP10.4□□□□□ -0.75
LIMCH1-217ENST00000512946 OR1D4P47884 311 aa10.4□□□□□ -0.75
LIMCH1-217ENST00000512946 SPCS3P61009 180 aa10.4□□□□□ -0.75
LIMCH1-217ENST00000512946 MPPED2Q15777 294 aa10.4□□□□□ -0.75
LIMCH1-217ENST00000512946 PHF19Q5T6S3 580 aa10.4□□□□□ -0.75
LIMCH1-217ENST00000512946 FIGLAQ6QHK4 219 aa10.4□□□□□ -0.75
LIMCH1-217ENST00000512946 TMPRSS11FQ6ZWK6 438 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms