RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 DSPPQ9NZW4 1301 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 CIB4A0PJX0 185 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF14P17017 642 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 HOXB9P17482 250 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 OR1D4P47884 311 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 TPMTP51580 245 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 YPEL5P62699 121 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 MLF2Q15773 248 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 TMEM91Q6ZNR0 172 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 COX15Q7KZN9 410 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 LIX1LQ8IVB5 337 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 IQCF2Q8IXL9 164 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 SVBPQ8N300 66 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 C9orf62Q8N4C0 152 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 TP53I13Q8NBR0 393 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 PATE1Q8WXA2 126 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 MIB2Q96AX9 1013 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC41A2Q96JW4 573 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 WFDC6Q9BQY6 131 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 NARFLQ9H6Q4 476 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 EDARQ9UNE0 448 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 GAAP10253 952 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 PTHLHP12272 177 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 TNFRSF4P43489 277 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 EMP2P54851 167 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 RAG2P55895 527 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 HERV-K104P61576 105 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 ACSM1Q08AH1 577 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 FCRL6Q6DN72 434 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 ZBTB44Q8NCP5 570 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 OR51T1Q8NGJ9 327 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 OR52B4Q8NGK2 314 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 NPRL2Q8WTW4 380 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC6A18Q96N87 628 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 CGGBP1Q9UFW8 167 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 EMC9Q9Y3B6 208 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 TRAV36DV7A0A075B6V5 113 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 LINC01553A4QN01 128 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 HCRTR1O43613 425 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 ZP2Q05996 745 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 Q6ZTK2 550 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 UEVLDQ8IX04 471 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 CA13Q8N1Q1 262 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 RCBTB1Q8NDN9 531 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 YIPF5Q969M3 257 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 DCBLD2Q96PD2 775 aa7.7□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF850A8MQ14 1090 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 LEUTXA8MZ59 168 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 LANCL1O43813 399 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SUSD5O60279 629 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 CXCL3P19876 107 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 POU3F3P20264 500 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SDHAP31040 664 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 TDGQ13569 410 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 ZIC1Q15915 447 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 UNQ6126/PRO20091Q6UXV3 157 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 OR6M1Q8NGM8 313 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 NT5CQ8TCD5 201 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SENP5Q96HI0 755 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 COX14Q96I36 57 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF416Q9BWM5 594 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 PRRG4Q9BZD6 226 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SLCO5A1Q9H2Y9 848 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SEMA6CQ9H3T2 930 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 FBXO34Q9NWN3 711 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 KIF25Q9UIL4 384 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC17A4Q9Y2C5 497 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SIP14410 1827 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 CNTRLQ7Z7A1 2325 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 A0A0B4J2E0 115 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 A0A1B0GX12 115 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 FITM1A5D6W6 292 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 DRD1P21728 446 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 POU3F1Q03052 451 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC9A3R2Q15599 337 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SMAD2Q15796 467 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 GLDNQ6ZMI3 551 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 ABHD12BQ7Z5M8 362 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 BCORP1Q8N888 145 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 OR2AK2Q8NG84 335 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 BAHD1Q8TBE0 780 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 PHOSPHO2Q8TCD6 241 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 TCTN2Q96GX1 697 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 RNF170Q96K19 258 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SIGLEC11Q96RL6 698 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 MRPS17Q9Y2R5 130 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 FAM221BA6H8Z2 402 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 LGALS8O00214 317 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 RFXAPO00287 272 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 CCSO14618 274 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 DUX1O43812 170 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 RGS11O94810 467 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 BDKRB2P30411 391 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 HSD11B2P80365 405 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 MELKQ14680 651 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF169Q14929 603 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 SHISA6Q6ZSJ9 500 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 ADGRE4PQ86SQ3 457 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 FRMD1Q8N878 549 aa7.69□□□□□ -1.18
LIMCH1-216ENST00000512820 OR13C9Q8NGT0 318 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms