RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	ASAH2B	P0C7U1	165 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	ZNF35	P13682	527 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	APEH	P13798	732 aa	Known RBP	10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	NR4A1	P22736	598 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	PTDSS1	P48651	473 aa	Known RBP	10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	CSNK1A1	P48729	337 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	UGT2B15	P54855	530 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	RUNX1T1	Q06455	604 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	DAG1	Q14118	895 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	VMAC	Q2NL98	169 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	TRMT5	Q32P41	509 aa	Known RBP	10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	CYB5R2	Q6BCY4	276 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	NANOGP8	Q6NSW7	305 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	SLC35D2	Q76EJ3	337 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	LRP11	Q86VZ4	500 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	CALHM3	Q86XJ0	350 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	SKA3	Q8IX90	412 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	PAQR4	Q8N4S7	273 aa	Predicted RBP	10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	OR6N1	Q8NGY5	312 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	PFN4	Q8NHR9	129 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	TMEM120A	Q9BXJ8	343 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	NANOG	Q9H9S0	305 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	TMEM160	Q9NX00	188 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	GMPR2	Q9P2T1	348 aa	Known RBP	10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	CDC42EP3	Q9UKI2	254 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	FZR1	Q9UM11	496 aa		10.03	□□□□□ -0.8
VTI1A-208	ENST00000494728	TRAPPC13	A5PLN9	417 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	LMX1B	O60663	402 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	LILRA1	O75019	489 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	ADRA2A	P08913	450 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	PGA4	P0DJD7	388 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	PGA3	P0DJD8	388 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	DAO	P14920	347 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	ZNF23	P17027	643 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	FUT1	P19526	365 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	PAX7	P23759	505 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	GIF	P27352	417 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	RAB39A	Q14964	217 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	MAD2L1BP	Q15013	274 aa	Predicted RBP	10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	FXN	Q16595	210 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	KRTAP24-1	Q3LI83	254 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	PODNL1	Q6PEZ8	512 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	LRFN4	Q6PJG9	635 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	CCDC80	Q76M96	950 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	PATL1	Q86TB9	770 aa	Known RBP	10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	CARM1	Q86X55	608 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	NKAIN4	Q8IVV8	208 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	TMEM255B	Q8WV15	326 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	MRPL24	Q96A35	216 aa	Known RBP	10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	SH3GL3	Q99963	347 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	SYT3	Q9BQG1	590 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	VIPAS39	Q9H9C1	493 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	MOV10	Q9HCE1	1003 aa	Known RBP	10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	C20orf141	Q9NUB4	165 aa		10.02	□□□□□ -0.81
VTI1A-208	ENST00000494728	LOC100289279	A0A1B0GTE1	492 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	ZNF726	A6NNF4	738 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	PIP5K1C	O60331	668 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	NCR1	O76036	304 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	CCL2	P13500	99 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	ALDH3B1	P43353	468 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	OR1E2	P47887	323 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	GZMK	P49863	264 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	SEC24C	P53992	1094 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	ERVS71-1	P61550	626 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	RAB1A	P62820	205 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	MYBPC1	Q00872	1141 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	RPL18	Q07020	188 aa	Known RBP	10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	ZP4	Q12836	540 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	RIN1	Q13671	783 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	ELFN2	Q5R3F8	820 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	FAM120AOS	Q5T036	256 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	REP15	Q6BDI9	236 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	FAM166A	Q6J272	317 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	TTC33	Q6PID6	262 aa	Predicted RBP	10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	HDX	Q7Z353	690 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	CCDC36	Q8IYA8	594 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	SLC22A24	Q8N4F4	322 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	OR6X1	Q8NH79	312 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	TSPEAR	Q8WU66	669 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	SNX18	Q96RF0	628 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	ZNF347	Q96SE7	839 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	REPIN1	Q9BWE0	567 aa	Known RBP	10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	BEX2	Q9BXY8	128 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	RAB1B	Q9H0U4	201 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	EVA1A	Q9H8M9	152 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	DYNLRB1	Q9NP97	96 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	MYOZ1	Q9NP98	299 aa	Predicted RBP	10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	B3GAT2	Q9NPZ5	323 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	NANS	Q9NR45	359 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	TMEM38B	Q9NVV0	291 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	GLTP	Q9NZD2	209 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	ZNF229	Q9UJW7	825 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	TRIM33	Q9UPN9	1127 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	POFUT2	Q9Y2G5	429 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	ARHGAP32	A7KAX9	2087 aa		10.01	□□□□□ -0.81
VTI1A-208	ENST00000494728	IGKV1D-43	A0A0B4J1Z2	117 aa		10	□□□□□ -0.81
VTI1A-208	ENST00000494728	WNT9B	O14905	357 aa		10	□□□□□ -0.81
VTI1A-208	ENST00000494728	RNF13	O43567	381 aa		10	□□□□□ -0.81
VTI1A-208	ENST00000494728	UBL3	O95164	117 aa		10	□□□□□ -0.81
VTI1A-208	ENST00000494728	RAB36	O95755	333 aa		10	□□□□□ -0.81

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