RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 KRTAP21-2Q3LI59 83 aa2.18□□□□□ -2.06
PTPN4-212ENST00000488896 ZNF493Q6ZR52 646 aa2.18□□□□□ -2.06
PTPN4-212ENST00000488896 TRMT10AQ8TBZ6 339 aaKnown RBP2.18□□□□□ -2.06
PTPN4-212ENST00000488896 RNF139Q8WU17 664 aa2.18□□□□□ -2.06
PTPN4-212ENST00000488896 LINC00597Q9H2U6 94 aa2.18□□□□□ -2.06
PTPN4-212ENST00000488896 WFDC1Q9HC57 220 aa2.18□□□□□ -2.06
PTPN4-212ENST00000488896 ADAP2Q9NPF8 381 aa2.18□□□□□ -2.06
PTPN4-212ENST00000488896 EXD2Q9NVH0 621 aa2.18□□□□□ -2.06
PTPN4-212ENST00000488896 GPATCH2LQ9NWQ4 482 aa2.18□□□□□ -2.06
PTPN4-212ENST00000488896 TAS2R3Q9NYW6 316 aa2.18□□□□□ -2.06
PTPN4-212ENST00000488896 POLDIP2Q9Y2S7 368 aa2.18□□□□□ -2.06
PTPN4-212ENST00000488896 NUP214P35658 2090 aaPredicted RBP2.18□□□□□ -2.06
PTPN4-212ENST00000488896 TET2Q6N021 2002 aaPredicted RBP2.17□□□□□ -2.06
PTPN4-212ENST00000488896 TMEM223A0PJW6 202 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 PRRG1O14668 218 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 XPO1O14980 1071 aaKnown RBP2.17□□□□□ -2.06
PTPN4-212ENST00000488896 CCNKO75909 580 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 FABP3P05413 133 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 IGHV1-8P0DP01 117 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 NAMPTP43490 491 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 CCR8P51685 355 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 CRYBB1P53674 252 aaPredicted RBP2.17□□□□□ -2.06
PTPN4-212ENST00000488896 KLRB1Q12918 225 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 NTM-AS1Q6ZSK4 140 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 FAM133AQ8N9E0 248 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 PYROXD1Q8WU10 500 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 TM4SF18Q96CE8 201 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 RNF157Q96PX1 679 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 THUMPD2Q9BTF0 503 aaKnown RBP2.17□□□□□ -2.06
PTPN4-212ENST00000488896 HMG20AQ9NP66 347 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 FARSBQ9NSD9 589 aaKnown RBP2.17□□□□□ -2.06
PTPN4-212ENST00000488896 BFARQ9NZS9 450 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 KIAA1257Q9ULG3 409 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 AURKCQ9UQB9 309 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 WDR62O43379 1518 aa2.17□□□□□ -2.06
PTPN4-212ENST00000488896 RPAP1Q9BWH6 1393 aaPredicted RBP2.16□□□□□ -2.06
PTPN4-212ENST00000488896 METTL21EPA6NDL7 271 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 CDRT1O95170 752 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 IFNB1P01574 187 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 IL4P05112 153 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 GPR6P46095 362 aaPredicted RBP2.16□□□□□ -2.06
PTPN4-212ENST00000488896 NPBWR2P48146 333 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 PRPSAP1Q14558 356 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 GANABQ14697 944 aaKnown RBP2.16□□□□□ -2.06
PTPN4-212ENST00000488896 POU2AF1Q16633 256 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 FAM78AQ5JUQ0 283 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 TTC25Q96NG3 672 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 ZNF382Q96SR6 550 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 OSBPL10Q9BXB5 764 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 RNF14Q9UBS8 474 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 ZNF229Q9UJW7 825 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 KIF3AQ9Y496 699 aa2.16□□□□□ -2.06
PTPN4-212ENST00000488896 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.15□□□□□ -2.07
PTPN4-212ENST00000488896 A8MUU9 505 aa2.15□□□□□ -2.07
PTPN4-212ENST00000488896 UPK3AO75631 287 aa2.15□□□□□ -2.07
PTPN4-212ENST00000488896 OR56A5P0C7T3 313 aa2.15□□□□□ -2.07
PTPN4-212ENST00000488896 AK4P27144 223 aaPredicted RBP2.15□□□□□ -2.07
PTPN4-212ENST00000488896 MDH1P40925 334 aaKnown RBP2.15□□□□□ -2.07
PTPN4-212ENST00000488896 CSNK1A1P48729 337 aa2.15□□□□□ -2.07
PTPN4-212ENST00000488896 NCBP1Q09161 790 aaKnown RBP2.15□□□□□ -2.07
PTPN4-212ENST00000488896 CDC20Q12834 499 aa2.15□□□□□ -2.07
PTPN4-212ENST00000488896 SLC39A6Q13433 755 aa2.15□□□□□ -2.07
PTPN4-212ENST00000488896 TTC23Q5W5X9 447 aa2.15□□□□□ -2.07
PTPN4-212ENST00000488896 ZDHHC21Q8IVQ6 265 aa2.15□□□□□ -2.07
PTPN4-212ENST00000488896 PALMDQ9NP74 551 aa2.15□□□□□ -2.07
PTPN4-212ENST00000488896 CGNQ9P2M7 1197 aaKnown RBP2.15□□□□□ -2.07
PTPN4-212ENST00000488896 CENPJQ9HC77 1338 aaPredicted RBP2.15□□□□□ -2.07
PTPN4-212ENST00000488896 HMCN1Q96RW7 5635 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 IGHV3-74A0A0B4J1X5 117 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 ZNF850A8MQ14 1090 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 RAMP3O60896 148 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 B3GALNT1O75752 331 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 BCHEP06276 602 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 CAPN1P07384 714 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 KRT13P13646 458 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 CCR1P32246 355 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 PPT1P50897 306 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 LOXL1Q08397 574 aaPredicted RBP2.14□□□□□ -2.07
PTPN4-212ENST00000488896 ZNF816Q0VGE8 651 aaPredicted RBP2.14□□□□□ -2.07
PTPN4-212ENST00000488896 PON3Q15166 354 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 IRF4Q15306 451 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 SLC36A3Q495N2 470 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 PHYHD1Q5SRE7 291 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 TMEM225Q6GV28 225 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 NUDCD3Q8IVD9 361 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 ZNF683Q8IZ20 524 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 ANKFN1Q8N957 763 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 NECAP1Q8NC96 275 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 MS4A4EQ96PG1 132 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 DOK1Q99704 481 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 CCT7Q99832 543 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 RNF5Q99942 180 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 POLE3Q9NRF9 147 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 UFSP2Q9NUQ7 469 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 ZNF586Q9NXT0 402 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 PIPOXQ9P0Z9 390 aa2.14□□□□□ -2.07
PTPN4-212ENST00000488896 HIDE1A8MVS5 230 aa2.13□□□□□ -2.07
PTPN4-212ENST00000488896 K7EPI3 171 aa2.13□□□□□ -2.07
PTPN4-212ENST00000488896 ZNF207O43670 478 aaKnown RBP2.13□□□□□ -2.07
PTPN4-212ENST00000488896 MGRN1O60291 552 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms