RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 FGFR1OP2Q9NVK5 253 aa13.16□□□□□ -0.3
LIMS3-203ENST00000480744 LYNX1G3V0Z9 82 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 DYNC1I1O14576 645 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 UBL3O95164 117 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 LYNX1P0DP58 116 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 UMPSP11172 480 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 ZNF14P17017 642 aaPredicted RBP13.15□□□□□ -0.3
LIMS3-203ENST00000480744 GIFP27352 417 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 MDH1P40925 334 aaKnown RBP13.15□□□□□ -0.3
LIMS3-203ENST00000480744 CHN2P52757 468 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 RAB1AP62820 205 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 GALK2Q01415 458 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 SF3A3Q12874 501 aaKnown RBP eCLIP13.15□□□□□ -0.3
LIMS3-203ENST00000480744 NHLRC1Q6VVB1 395 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 WDR88Q6ZMY6 472 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 SLC35D2Q76EJ3 337 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 DPP10Q8N608 796 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 STON2Q8WXE9 905 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 MRPL24Q96A35 216 aaKnown RBP13.15□□□□□ -0.3
LIMS3-203ENST00000480744 SNX18Q96RF0 628 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 SYT3Q9BQG1 590 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 SLC7A7Q9UM01 511 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 TRIM33Q9UPN9 1127 aa13.15□□□□□ -0.3
LIMS3-203ENST00000480744 M0R233 179 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 RNF13O43567 381 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 C8BP07358 591 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 IGFBP1P08833 259 aaPredicted RBP13.14□□□□□ -0.31
LIMS3-203ENST00000480744 PATE4P0C8F1 98 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 TCN1P20061 433 aaPredicted RBP13.14□□□□□ -0.31
LIMS3-203ENST00000480744 APEX1P27695 318 aaKnown RBP13.14□□□□□ -0.31
LIMS3-203ENST00000480744 IL2RGP31785 369 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 LSP1P33241 339 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 PCGF2P35227 344 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 SRSF2Q01130 221 aaKnown RBP13.14□□□□□ -0.31
LIMS3-203ENST00000480744 MELKQ14680 651 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 RAB39AQ14964 217 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 ZNF74Q16587 644 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 MSMPQ1L6U9 139 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 LINC00114Q6XXX2 140 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 ZNF627Q7L945 461 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 PATL1Q86TB9 770 aaKnown RBP13.14□□□□□ -0.31
LIMS3-203ENST00000480744 SLC30A8Q8IWU4 369 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 ZNF786Q8N393 782 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 OR4D11Q8NGI4 311 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 OR10A6Q8NH74 314 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 ADAMTS16Q8TE57 1224 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 TAMM41Q96BW9 452 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 ZNF385DQ9H6B1 395 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 NANSQ9NR45 359 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 GLTPQ9NZD2 209 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 ZNF224Q9NZL3 707 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 REV1Q9UBZ9 1251 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 FZR1Q9UM11 496 aa13.14□□□□□ -0.31
LIMS3-203ENST00000480744 A0A0G2JND7 137 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 TRAPPC13A5PLN9 417 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 SYNGR3O43761 229 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 LILRA1O75019 489 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 LYPD3O95274 346 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 THY1P04216 161 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 HIST1H2ABP04908 130 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 ZNF35P13682 527 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 CD247P20963 164 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 ALDH3B1P43353 468 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 GYS2P54840 703 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 RPS23P62266 143 aaKnown RBP13.13□□□□□ -0.31
LIMS3-203ENST00000480744 MAD2L1BPQ15013 274 aaPredicted RBP13.13□□□□□ -0.31
LIMS3-203ENST00000480744 TRIP10Q15642 601 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 CR1LQ2VPA4 569 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 KRTAP24-1Q3LI83 254 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 HIST3H2AQ7L7L0 130 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 NANOGNBQ7Z5D8 188 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 SKA3Q8IX90 412 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 LRRC17Q8N6Y2 441 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 OR6X1Q8NH79 312 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 HIST1H2ACQ93077 130 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 TMEM54Q969K7 222 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 ZNF566Q969W8 418 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 ZNF75AQ96N20 296 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 TMEM120AQ9BXJ8 343 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 DENND2DQ9H6A0 471 aaPredicted RBP13.13□□□□□ -0.31
LIMS3-203ENST00000480744 KAT8Q9H7Z6 458 aaKnown RBP13.13□□□□□ -0.31
LIMS3-203ENST00000480744 TAS2R5Q9NYW4 299 aa13.13□□□□□ -0.31
LIMS3-203ENST00000480744 A0A1W2PPW3 197 aa13.12□□□□□ -0.31
LIMS3-203ENST00000480744 VIMP08670 466 aaKnown RBP13.12□□□□□ -0.31
LIMS3-203ENST00000480744 TACSTD2P09758 323 aa13.12□□□□□ -0.31
LIMS3-203ENST00000480744 GLRXP35754 106 aa13.12□□□□□ -0.31
LIMS3-203ENST00000480744 SEC24CP53992 1094 aa13.12□□□□□ -0.31
LIMS3-203ENST00000480744 CCNIQ14094 377 aa13.12□□□□□ -0.31
LIMS3-203ENST00000480744 INTS11Q5TA45 600 aaKnown RBP13.12□□□□□ -0.31
LIMS3-203ENST00000480744 PIWIL3Q7Z3Z3 882 aaKnown RBP13.12□□□□□ -0.31
LIMS3-203ENST00000480744 TSPYL5Q86VY4 417 aaPredicted RBP13.12□□□□□ -0.31
LIMS3-203ENST00000480744 LRP11Q86VZ4 500 aa13.12□□□□□ -0.31
LIMS3-203ENST00000480744 SLC22A24Q8N4F4 322 aa13.12□□□□□ -0.31
LIMS3-203ENST00000480744 FGFBP3Q8TAT2 258 aa13.12□□□□□ -0.31
LIMS3-203ENST00000480744 MPP4Q96JB8 637 aa13.12□□□□□ -0.31
LIMS3-203ENST00000480744 SH3GL3Q99963 347 aa13.12□□□□□ -0.31
LIMS3-203ENST00000480744 MS4A5Q9H3V2 200 aa13.12□□□□□ -0.31
LIMS3-203ENST00000480744 RNF121Q9H920 327 aa13.12□□□□□ -0.31
LIMS3-203ENST00000480744 MYEF2Q9P2K5 600 aaKnown RBP13.12□□□□□ -0.31
LIMS3-203ENST00000480744 DUSP13Q9UII6 198 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms