RNA–Protein interactions for RNA: ENST00000475482.5

CPSF3-203, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 4

Gene CPSF3, Length 871 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-203ENST00000475482 CCDC159P0C7I6 412 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 CCNA2P20248 432 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 PTNP21246 168 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 CARD18P57730 90 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 MYBPC1Q00872 1141 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 SELENBP1Q13228 472 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 CDK5R2Q13319 367 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 ZNF74Q16587 644 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 ZNF239Q16600 458 aaKnown RBP13.86□□□□□ -0.19
CPSF3-203ENST00000475482 FAM69AQ5T7M9 428 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 C1orf140Q5VVS0 124 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 C3orf33Q6P1S2 294 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 PAMR1Q6UXH9 720 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 ENTHD1Q8IYW4 607 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 RHOXF1Q8NHV9 184 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 RNF128Q8TEB7 428 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 CPNE4Q96A23 557 aaPredicted RBP13.86□□□□□ -0.19
CPSF3-203ENST00000475482 SRXN1Q9BYN0 137 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 POTEKPQ9BYX7 375 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 PRRG4Q9BZD6 226 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 EGLN3Q9H6Z9 239 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 GP6Q9HCN6 339 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 EMC9Q9Y3B6 208 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 TPRKBQ9Y3C4 175 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 C2CD3Q4AC94 2353 aa13.86□□□□□ -0.19
CPSF3-203ENST00000475482 ARID1AO14497 2285 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 TMEM72A0PK05 275 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 GJE1A6NN92 205 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 DEFB108AA8MXU0 73 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 C16orf97H3BN30 126 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 PTP4A3O75365 173 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 ATE1O95260 518 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 CRYGSP22914 178 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 GTF2E2P29084 291 aaKnown RBP13.85□□□□□ -0.19
CPSF3-203ENST00000475482 GRK5P34947 590 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 SFTPDP35247 375 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 SNRPGP62308 76 aaKnown RBP13.85□□□□□ -0.19
CPSF3-203ENST00000475482 EGR4Q05215 589 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 PGGHGQ32M88 737 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 TMEM176BQ3YBM2 270 aaPredicted RBP13.85□□□□□ -0.19
CPSF3-203ENST00000475482 MEDAGQ5VYS4 303 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 TMEM236Q5W0B7 351 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 GTF2IRD2BQ6EKJ0 949 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 C22orf34Q6ZV56 151 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 NANOGNBQ7Z5D8 188 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 GTF2IRD2Q86UP8 949 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 MEX3DQ86XN8 651 aaKnown RBP13.85□□□□□ -0.19
CPSF3-203ENST00000475482 OR13C2Q8NGS9 318 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 OR51A7Q8NH64 312 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 ZNF566Q969W8 418 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 SAMD8Q96LT4 415 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 ASPNQ9BXN1 380 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 TVP23BQ9NYZ1 205 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 CLEC4AQ9UMR7 237 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 EDARQ9UNE0 448 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 PLEKHA6Q9Y2H5 1048 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 CORINQ9Y5Q5 1042 aa13.85□□□□□ -0.19
CPSF3-203ENST00000475482 RAI1Q7Z5J4 1906 aaPredicted RBP13.85□□□□□ -0.19
CPSF3-203ENST00000475482 CASKO14936 926 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 NPIPB7O75200 414 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 LOXP28300 417 aaPredicted RBP13.84□□□□□ -0.19
CPSF3-203ENST00000475482 AGTR1P30556 359 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 RPS5P46782 204 aaKnown RBP13.84□□□□□ -0.19
CPSF3-203ENST00000475482 GABARAPL2P60520 117 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 RAC3P60763 192 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 SNAPC1Q16533 368 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 CLEC12AQ5QGZ9 265 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 DPY19L2P2Q6ZN68 376 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 SLC46A3Q7Z3Q1 461 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 ROBO4Q8WZ75 1007 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 KTI12Q96EK9 354 aaPredicted RBP13.84□□□□□ -0.19
CPSF3-203ENST00000475482 IFT27Q9BW83 186 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 TAPBPLQ9BX59 468 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 PLA2G12AQ9BZM1 189 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 CCNB1IP1Q9NPC3 277 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 TIGARQ9NQ88 270 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 ING1Q9UK53 422 aaPredicted RBP13.84□□□□□ -0.19
CPSF3-203ENST00000475482 HIF3AQ9Y2N7 669 aa13.84□□□□□ -0.19
CPSF3-203ENST00000475482 SETD2Q9BYW2 2564 aaPredicted RBP13.83□□□□□ -0.19
CPSF3-203ENST00000475482 TRAV27A0A087WT01 109 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 A0A087WXM4 84 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 SLC1A7O00341 560 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 IDH3BO43837 385 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 PLGP00747 810 aaPredicted RBP13.83□□□□□ -0.2
CPSF3-203ENST00000475482 IFNGP01579 166 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 RAF1P04049 648 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 IGFBP1P08833 259 aaPredicted RBP13.83□□□□□ -0.2
CPSF3-203ENST00000475482 ASAH2BP0C7U1 165 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 TFPIP10646 304 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 EEF1B2P24534 225 aaKnown RBP13.83□□□□□ -0.2
CPSF3-203ENST00000475482 DNASE1P24855 282 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 NOS3P29474 1203 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 IDUAP35475 653 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 RPL4P36578 427 aaKnown RBP13.83□□□□□ -0.2
CPSF3-203ENST00000475482 RNPS1Q15287 305 aaKnown RBP13.83□□□□□ -0.2
CPSF3-203ENST00000475482 SLC25A30Q5SVS4 291 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 TMEM154Q6P9G4 183 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 STAC2Q6ZMT1 411 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 LNX2Q8N448 690 aa13.83□□□□□ -0.2
CPSF3-203ENST00000475482 TCEANCQ8N8B7 351 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms