RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PATE4P0C8F1 98 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 IGHV4-31P0DP07 118 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 NPR2P20594 1047 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 FUT4P22083 530 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 USF1P22415 310 aaPredicted RBP16.03■□□□□ 0.16
COL7A1-209ENST00000474432 NR4A1P22736 598 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 PDLIM4P50479 330 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 GUCY1A3Q02108 690 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 RUNX1T1Q06455 604 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 MELKQ14680 651 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 ZNF584Q8IVC4 421 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 SKA3Q8IX90 412 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 SVOPLQ8N434 492 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 IL17RDQ8NFM7 739 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 PFN4Q8NHR9 129 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 FOXN4Q96NZ1 517 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 VRK1Q99986 396 aaPredicted RBP16.03■□□□□ 0.16
COL7A1-209ENST00000474432 CCDC134Q9H6E4 229 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 C20orf141Q9NUB4 165 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 GLTPQ9NZD2 209 aa16.03■□□□□ 0.16
COL7A1-209ENST00000474432 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.02■□□□□ 0.16
COL7A1-209ENST00000474432 OR6A2O95222 327 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 MT-ND1P03886 318 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 PGA4P0DJD7 388 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 PGA3P0DJD8 388 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 CD79AP11912 226 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 NR4A2P43354 598 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 OR1E2P47887 323 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 GIPRP48546 466 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 RAB1AP62820 205 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 SNTB2Q13425 540 aaKnown RBP16.02■□□□□ 0.16
COL7A1-209ENST00000474432 PIN1Q13526 163 aaPredicted RBP16.02■□□□□ 0.16
COL7A1-209ENST00000474432 HIST3H3Q16695 136 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 KRT80Q6KB66 452 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 ERICH5Q6P6B1 374 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 CDK20Q8IZL9 346 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 TMEM255BQ8WV15 326 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 SLC25A44Q96H78 314 aaPredicted RBP16.02■□□□□ 0.16
COL7A1-209ENST00000474432 SEPHS2Q99611 448 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 RIMS3Q9UJD0 308 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 BAG5Q9UL15 447 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 FKBP7Q9Y680 259 aa16.02■□□□□ 0.16
COL7A1-209ENST00000474432 IGHV4-61A0A0C4DH41 118 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 NDUFS8O00217 210 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 RNF13O43567 381 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 OR5F1O95221 314 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 VIMP08670 466 aaKnown RBP16.01■□□□□ 0.15
COL7A1-209ENST00000474432 KDELR2P33947 212 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 LSM11P83369 360 aaKnown RBP eCLIP16.01■□□□□ 0.15
COL7A1-209ENST00000474432 RPL18Q07020 188 aaKnown RBP16.01■□□□□ 0.15
COL7A1-209ENST00000474432 DAG1Q14118 895 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 FXNQ16595 210 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 MMEL1Q495T6 779 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 CYBRD1Q53TN4 286 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 PIWIL3Q7Z3Z3 882 aaKnown RBP16.01■□□□□ 0.15
COL7A1-209ENST00000474432 SPATA21Q7Z572 469 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 LIPHQ8WWY8 451 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 MRPL13Q9BYD1 178 aaKnown RBP16.01■□□□□ 0.15
COL7A1-209ENST00000474432 MRGBPQ9NV56 204 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 TMEM38BQ9NVV0 291 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 CMTM6Q9NX76 183 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 ARMCX1Q9P291 453 aa16.01■□□□□ 0.15
COL7A1-209ENST00000474432 LOC390937A0A1W2PQ73 354 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 FAM220BPB1ANY3 271 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 DHHO43323 396 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 OR7A10O76100 309 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 IGF2P01344 180 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 F13BP05160 661 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 FUT1P19526 365 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 RBM34P42696 430 aaKnown RBP16■□□□□ 0.15
COL7A1-209ENST00000474432 PTDSS1P48651 473 aaKnown RBP16■□□□□ 0.15
COL7A1-209ENST00000474432 RAB39AQ14964 217 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 MAPRE2Q15555 327 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 DEF8Q6ZN54 512 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 SLC22A24Q8N4F4 322 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 ZNF566Q969W8 418 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 RCN3Q96D15 328 aa16■□□□□ 0.15
COL7A1-209ENST00000474432 MRPL37Q9BZE1 423 aaKnown RBP16■□□□□ 0.15
COL7A1-209ENST00000474432 POLR2J2Q9GZM3 115 aaKnown RBP16■□□□□ 0.15
COL7A1-209ENST00000474432 POLR2J3Q9H1A7 115 aaKnown RBP16■□□□□ 0.15
COL7A1-209ENST00000474432 DENND2DQ9H6A0 471 aaPredicted RBP16■□□□□ 0.15
COL7A1-209ENST00000474432 BLOC1S5-TXNDC5H3BN57 136 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 STAMBPO95630 424 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 HIST1H2ABP04908 130 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 QDPRP09417 244 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 UMPSP11172 480 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 ZNF16P17020 682 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-209ENST00000474432 GLRXP35754 106 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 AQP2P41181 271 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 ZNF133P52736 654 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-209ENST00000474432 TAS2R41P59536 307 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 GGTLC2Q14390 218 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 CYB5R2Q6BCY4 276 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 HIST3H2AQ7L7L0 130 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 NANOGNBQ7Z5D8 188 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 MICU2Q8IYU8 434 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 POU5F2Q8N7G0 328 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 MOSPD2Q8NHP6 518 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 TMEM239Q8WW34 195 aa15.99■□□□□ 0.15
COL7A1-209ENST00000474432 ASB10Q8WXI3 467 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms