RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TNFRSF13CQ96RJ3 184 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 ZNF426Q9BUY5 554 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 SLC19A3Q9BZV2 496 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 GID8Q9NWU2 228 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 B3GNT2Q9NY97 397 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 TAS2R5Q9NYW4 299 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 ZNF229Q9UJW7 825 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 BAG5Q9UL15 447 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 CAPN7Q9Y6W3 813 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 FAM220BPB1ANY3 271 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 NPPAP01160 153 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 NPR2P20594 1047 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 OR1E2P47887 323 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 PTDSS1P48651 473 aaKnown RBP13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 UGT2B15P54855 530 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 LOXL1Q08397 574 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 ZP4Q12836 540 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 DAG1Q14118 895 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 EFNB3Q15768 340 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 SPATA21Q7Z572 469 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 NKAIN4Q8IVV8 208 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 SVOPLQ8N434 492 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 POU5F2Q8N7G0 328 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 OR6X1Q8NH79 312 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 C10orf82Q8WW14 230 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 TMEM54Q969K7 222 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 ZNF566Q969W8 418 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 ZNF583Q96ND8 569 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 PLK3Q9H4B4 646 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 ZNF442Q9H7R0 627 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 MEPEQ9NQ76 525 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 GLTPQ9NZD2 209 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 ARMCX1Q9P291 453 aa13.6□□□□□ -0.23
CCDC88B-205ENST00000472524 VSTM5A8MXK1 200 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 BLOC1S5-TXNDC5H3BN57 136 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 PHF1O43189 567 aaPredicted RBP13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 RAB36O95755 333 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 ASAH2BP0C7U1 165 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 GIPRP48546 466 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 PPOXP50336 477 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 PIN1Q13526 163 aaPredicted RBP13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 GGTLC2Q14390 218 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 CYBRD1Q53TN4 286 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 HSP90B2PQ58FF3 399 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 ZNF627Q7L945 461 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 IL17RDQ8NFM7 739 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 TMEM255BQ8WV15 326 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 TMEM158Q8WZ71 300 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 RCN3Q96D15 328 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 TPD52L3Q96J77 140 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 PIMREGQ9BSJ6 248 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 ZNF224Q9NZL3 707 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 RIMS3Q9UJD0 308 aa13.59□□□□□ -0.23
CCDC88B-205ENST00000472524 SH3PXD2BA1X283 911 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 MCIDASD6RGH6 385 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 OR7A10O76100 309 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 UBL3O95164 117 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 OR5F1O95221 314 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 BCL10O95999 233 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 IFNA14P01570 189 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 MT-ND1P03886 318 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 PATE4P0C8F1 98 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 FAM157CP0CG43 387 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 ZNF14P17017 642 aaPredicted RBP13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 USF1P22415 310 aaPredicted RBP13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 CLRN1P58418 232 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 RAB1AP62820 205 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 VLDLRP98155 873 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 CDK20Q8IZL9 346 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 ZCCHC24Q8N2G6 241 aaKnown RBP13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 OR2T12Q8NG77 320 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 TMEM239Q8WW34 195 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 SGTBQ96EQ0 304 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 SLC25A44Q96H78 314 aaPredicted RBP13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 POLR2J2Q9GZM3 115 aaKnown RBP13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 RAB1BQ9H0U4 201 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 POLR2J3Q9H1A7 115 aaKnown RBP13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 DYNLRB1Q9NP97 96 aa13.58□□□□□ -0.24
CCDC88B-205ENST00000472524 ELOVL7A1L3X0 281 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 IGHG1P01857 330 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 F13BP05160 661 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 PGA4P0DJD7 388 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 PGA3P0DJD8 388 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 ZNF16P17020 682 aaPredicted RBP13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 FUT1P19526 365 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 KDELR2P33947 212 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 RBM34P42696 430 aaKnown RBP13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 MYBPC1Q00872 1141 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 RPL18Q07020 188 aaKnown RBP13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 RAB39AQ14964 217 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 LRFN4Q6PJG9 635 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 PIWIL3Q7Z3Z3 882 aaKnown RBP13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 SKA3Q8IX90 412 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 MICU2Q8IYU8 434 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 SLC22A24Q8N4F4 322 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 FGFBP3Q8TAT2 258 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 ZNF75AQ96N20 296 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 ZNF347Q96SE7 839 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 DOK1Q99704 481 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 SH3GL3Q99963 347 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms