RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 ADAMTS16Q8TE57 1224 aa21.09■□□□□ 0.97
PTCH1-210ENST00000468211 TMEM54Q969K7 222 aa21.09■□□□□ 0.97
PTCH1-210ENST00000468211 MRPL24Q96A35 216 aaKnown RBP21.09■□□□□ 0.97
PTCH1-210ENST00000468211 TAMM41Q96BW9 452 aa21.09■□□□□ 0.97
PTCH1-210ENST00000468211 KAT8Q9H7Z6 458 aaKnown RBP21.09■□□□□ 0.97
PTCH1-210ENST00000468211 FBXO9Q9UK97 447 aaPredicted RBP21.09■□□□□ 0.97
PTCH1-210ENST00000468211 ANGPT2O15123 496 aa21.08■□□□□ 0.97
PTCH1-210ENST00000468211 CH25HO95992 272 aa21.08■□□□□ 0.97
PTCH1-210ENST00000468211 TACSTD2P09758 323 aa21.08■□□□□ 0.97
PTCH1-210ENST00000468211 CRYBA2P53672 197 aa21.08■□□□□ 0.97
PTCH1-210ENST00000468211 RAB1AP62820 205 aa21.08■□□□□ 0.97
PTCH1-210ENST00000468211 TRIP10Q15642 601 aa21.08■□□□□ 0.97
PTCH1-210ENST00000468211 SLC35D2Q76EJ3 337 aa21.08■□□□□ 0.97
PTCH1-210ENST00000468211 LRP11Q86VZ4 500 aa21.08■□□□□ 0.97
PTCH1-210ENST00000468211 SKA3Q8IX90 412 aa21.08■□□□□ 0.97
PTCH1-210ENST00000468211 UBASH3BQ8TF42 649 aa21.08■□□□□ 0.97
PTCH1-210ENST00000468211 STON2Q8WXE9 905 aa21.08■□□□□ 0.97
PTCH1-210ENST00000468211 SLC7A7Q9UM01 511 aa21.08■□□□□ 0.97
PTCH1-210ENST00000468211 KPNA4O00629 521 aaPredicted RBP21.07■□□□□ 0.96
PTCH1-210ENST00000468211 GZMMP51124 257 aa21.07■□□□□ 0.96
PTCH1-210ENST00000468211 RIN1Q13671 783 aa21.07■□□□□ 0.96
PTCH1-210ENST00000468211 NFYCQ13952 458 aa21.07■□□□□ 0.96
PTCH1-210ENST00000468211 MELKQ14680 651 aa21.07■□□□□ 0.96
PTCH1-210ENST00000468211 RAB39AQ14964 217 aa21.07■□□□□ 0.96
PTCH1-210ENST00000468211 LRFN4Q6PJG9 635 aa21.07■□□□□ 0.96
PTCH1-210ENST00000468211 ZNF584Q8IVC4 421 aa21.07■□□□□ 0.96
PTCH1-210ENST00000468211 MAGEB18Q96M61 343 aa21.07■□□□□ 0.96
PTCH1-210ENST00000468211 SYT3Q9BQG1 590 aa21.07■□□□□ 0.96
PTCH1-210ENST00000468211 MYEF2Q9P2K5 600 aaKnown RBP21.07■□□□□ 0.96
PTCH1-210ENST00000468211 ERCC1P07992 297 aaPredicted RBP21.06■□□□□ 0.96
PTCH1-210ENST00000468211 PCGF2P35227 344 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 SEC24CP53992 1094 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 ZP4Q12836 540 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 FXNQ16595 210 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 CR1LQ2VPA4 569 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 TRMT5Q32P41 509 aaKnown RBP21.06■□□□□ 0.96
PTCH1-210ENST00000468211 OR10A6Q8NH74 314 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 OR6X1Q8NH79 312 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 SNX18Q96RF0 628 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 PRSS27Q9BQR3 290 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 ZNF426Q9BUY5 554 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 NPHS2Q9NP85 383 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 GLTPQ9NZD2 209 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 FZR1Q9UM11 496 aa21.06■□□□□ 0.96
PTCH1-210ENST00000468211 TRAPPC13A5PLN9 417 aa21.05■□□□□ 0.96
PTCH1-210ENST00000468211 SYNGR3O43761 229 aa21.05■□□□□ 0.96
PTCH1-210ENST00000468211 OR6A2O95222 327 aa21.05■□□□□ 0.96
PTCH1-210ENST00000468211 RAB36O95755 333 aa21.05■□□□□ 0.96
PTCH1-210ENST00000468211 TCN1P20061 433 aaPredicted RBP21.05■□□□□ 0.96
PTCH1-210ENST00000468211 THBS2P35442 1172 aa21.05■□□□□ 0.96
PTCH1-210ENST00000468211 GLRXP35754 106 aa21.05■□□□□ 0.96
PTCH1-210ENST00000468211 ALDH3B1P43353 468 aa21.05■□□□□ 0.96
PTCH1-210ENST00000468211 EVX1P49640 407 aa21.05■□□□□ 0.96
PTCH1-210ENST00000468211 CHN2P52757 468 aa21.05■□□□□ 0.96
PTCH1-210ENST00000468211 MAD2L1BPQ15013 274 aaPredicted RBP21.05■□□□□ 0.96
PTCH1-210ENST00000468211 TTC33Q6PID6 262 aaPredicted RBP21.05■□□□□ 0.96
PTCH1-210ENST00000468211 PATL1Q86TB9 770 aaKnown RBP21.05■□□□□ 0.96
PTCH1-210ENST00000468211 PCDHAC1Q9H158 963 aa21.05■□□□□ 0.96
PTCH1-210ENST00000468211 NANSQ9NR45 359 aa21.05■□□□□ 0.96
PTCH1-210ENST00000468211 REV1Q9UBZ9 1251 aa21.05■□□□□ 0.96
PTCH1-210ENST00000468211 FBP2O00757 339 aa21.04■□□□□ 0.96
PTCH1-210ENST00000468211 UBL3O95164 117 aa21.04■□□□□ 0.96
PTCH1-210ENST00000468211 APEX1P27695 318 aaKnown RBP21.04■□□□□ 0.96
PTCH1-210ENST00000468211 ELFN2Q5R3F8 820 aa21.04■□□□□ 0.96
PTCH1-210ENST00000468211 PIWIL3Q7Z3Z3 882 aaKnown RBP21.04■□□□□ 0.96
PTCH1-210ENST00000468211 CARM1Q86X55 608 aa21.04■□□□□ 0.96
PTCH1-210ENST00000468211 SNX32Q86XE0 403 aa21.04■□□□□ 0.96
PTCH1-210ENST00000468211 SLC22A24Q8N4F4 322 aa21.04■□□□□ 0.96
PTCH1-210ENST00000468211 TSPEARQ8WU66 669 aa21.04■□□□□ 0.96
PTCH1-210ENST00000468211 SH3GL3Q99963 347 aa21.04■□□□□ 0.96
PTCH1-210ENST00000468211 DENND2DQ9H6A0 471 aaPredicted RBP21.04■□□□□ 0.96
PTCH1-210ENST00000468211 MEPEQ9NQ76 525 aaPredicted RBP21.04■□□□□ 0.96
PTCH1-210ENST00000468211 M0R233 179 aa21.03■□□□□ 0.96
PTCH1-210ENST00000468211 RNF13O43567 381 aa21.03■□□□□ 0.96
PTCH1-210ENST00000468211 EDF1O60869 148 aaKnown RBP21.03■□□□□ 0.96
PTCH1-210ENST00000468211 HPXP02790 462 aa21.03■□□□□ 0.96
PTCH1-210ENST00000468211 ASAH2BP0C7U1 165 aa21.03■□□□□ 0.96
PTCH1-210ENST00000468211 PAQR4Q8N4S7 273 aaPredicted RBP21.03■□□□□ 0.96
PTCH1-210ENST00000468211 ZNF566Q969W8 418 aa21.03■□□□□ 0.96
PTCH1-210ENST00000468211 SLC25A44Q96H78 314 aaPredicted RBP21.03■□□□□ 0.96
PTCH1-210ENST00000468211 TMEM38BQ9NVV0 291 aa21.03■□□□□ 0.96
PTCH1-210ENST00000468211 ZNF229Q9UJW7 825 aa21.03■□□□□ 0.96
PTCH1-210ENST00000468211 TRIM33Q9UPN9 1127 aa21.03■□□□□ 0.96
PTCH1-210ENST00000468211 SPEF1Q9Y4P9 236 aa21.03■□□□□ 0.96
PTCH1-210ENST00000468211 HMGB1P1B2RPK0 211 aaPredicted RBP21.02■□□□□ 0.96
PTCH1-210ENST00000468211 SERPINA5P05154 406 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 PGA4P0DJD7 388 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 PGA3P0DJD8 388 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 TNFRSF1BP20333 461 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 HNF1AP20823 631 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 COL8A2P25067 703 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 RUNX1T1Q06455 604 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 CCNIQ14094 377 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 VMACQ2NL98 169 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 RABL3Q5HYI8 236 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 GKAP1Q5VSY0 366 aaPredicted RBP21.02■□□□□ 0.96
PTCH1-210ENST00000468211 NANOGP8Q6NSW7 305 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 SLC30A8Q8IWU4 369 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 SLC26A7Q8TE54 656 aa21.02■□□□□ 0.96
PTCH1-210ENST00000468211 HPS1Q92902 700 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms