RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 THBS4P35443 961 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 PTDSS1P48651 473 aaKnown RBP12.08□□□□□ -0.48
USP4-206ENST00000461553 CRYBA2P53672 197 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 HGFACQ04756 655 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 ZP4Q12836 540 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 SF3A3Q12874 501 aaKnown RBP eCLIP12.08□□□□□ -0.48
USP4-206ENST00000461553 HDDC2Q7Z4H3 204 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 SPATA21Q7Z572 469 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 TSPYL5Q86VY4 417 aaPredicted RBP12.08□□□□□ -0.48
USP4-206ENST00000461553 CALHM3Q86XJ0 350 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 SVOPLQ8N434 492 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 OR6X1Q8NH79 312 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 RAB1BQ9H0U4 201 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 DENND2DQ9H6A0 471 aaPredicted RBP12.08□□□□□ -0.48
USP4-206ENST00000461553 SAR1AQ9NR31 198 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 GID8Q9NWU2 228 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 GLTPQ9NZD2 209 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 SPEF1Q9Y4P9 236 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 LOC390937A0A1W2PQ73 354 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 MCIDASD6RGH6 385 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 OR5F1O95221 314 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 FARS2O95363 451 aaKnown RBP12.07□□□□□ -0.48
USP4-206ENST00000461553 IGHG1P01857 330 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 ASAH2BP0C7U1 165 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 LSP1P33241 339 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 RBM34P42696 430 aaKnown RBP12.07□□□□□ -0.48
USP4-206ENST00000461553 RPS23P62266 143 aaKnown RBP12.07□□□□□ -0.48
USP4-206ENST00000461553 GALK2Q01415 458 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 PIGFQ07326 219 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 GGTLC2Q14390 218 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 CHRFAM7AQ494W8 412 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 HSP90B2PQ58FF3 399 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 CGB2Q6NT52 195 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 NHLRC1Q6VVB1 395 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 WDFY1Q8IWB7 410 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 LRRC17Q8N6Y2 441 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 TMEM54Q969K7 222 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 SLC25A44Q96H78 314 aaPredicted RBP12.07□□□□□ -0.48
USP4-206ENST00000461553 PRSS27Q9BQR3 290 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 B3GNT2Q9NY97 397 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 TAS2R5Q9NYW4 299 aa12.07□□□□□ -0.48
USP4-206ENST00000461553 MXRA5Q9NR99 2828 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 A0A1W2PRG6 482 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 BLOC1S5-TXNDC5H3BN57 136 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 SLC22A2O15244 555 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 BCL10O95999 233 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 MT-ND1P03886 318 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 PGA4P0DJD7 388 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 PGA3P0DJD8 388 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 ZNF14P17017 642 aaPredicted RBP12.06□□□□□ -0.48
USP4-206ENST00000461553 TNFRSF1BP20333 461 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 NR4A2P43354 598 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 GIPRP48546 466 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 GZMKP49863 264 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 UGT2B15P54855 530 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 CLRN1P58418 232 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 LSM11P83369 360 aaKnown RBP eCLIP12.06□□□□□ -0.48
USP4-206ENST00000461553 IQCCQ4KMZ1 466 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 GKAP1Q5VSY0 366 aaPredicted RBP12.06□□□□□ -0.48
USP4-206ENST00000461553 PIWIL3Q7Z3Z3 882 aaKnown RBP12.06□□□□□ -0.48
USP4-206ENST00000461553 ARPINQ7Z6K5 226 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 HIPK1Q86Z02 1210 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 NOXO1Q8NFA2 376 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 OR2T12Q8NG77 320 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 PFN4Q8NHR9 129 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 TMEM255BQ8WV15 326 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 SGTBQ96EQ0 304 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 MS4A3Q96HJ5 214 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 MEPEQ9NQ76 525 aaPredicted RBP12.06□□□□□ -0.48
USP4-206ENST00000461553 TMEM38BQ9NVV0 291 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 ZNF224Q9NZL3 707 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 CMAHPQ9Y471 501 aa12.06□□□□□ -0.48
USP4-206ENST00000461553 LOC100653049A0A140TA62 436 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 VWC2LB2RUY7 222 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 SHOX2O60902 331 aaPredicted RBP12.05□□□□□ -0.48
USP4-206ENST00000461553 KRT34O76011 436 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 OR7A10O76100 309 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 IGF2P01344 180 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 IFNA2P01563 188 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 OR8G3PP0DMU2 310 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 IGHV4-31P0DP07 118 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 APEHP13798 732 aaKnown RBP12.05□□□□□ -0.48
USP4-206ENST00000461553 NR4A1P22736 598 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 IFNA8P32881 189 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 DAP3P51398 398 aaKnown RBP12.05□□□□□ -0.48
USP4-206ENST00000461553 RAB1AP62820 205 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 GUCY1A3Q02108 690 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 RPL18Q07020 188 aaKnown RBP12.05□□□□□ -0.48
USP4-206ENST00000461553 CYBRD1Q53TN4 286 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 CYB5R2Q6BCY4 276 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 NKAIN4Q8IVV8 208 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 CDK20Q8IZL9 346 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 ZNF540Q8NDQ6 660 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 C10orf82Q8WW14 230 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 TMEM239Q8WW34 195 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 NEU4Q8WWR8 484 aaPredicted RBP12.05□□□□□ -0.48
USP4-206ENST00000461553 LZICQ8WZA0 190 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 MRPL24Q96A35 216 aaKnown RBP12.05□□□□□ -0.48
USP4-206ENST00000461553 RCN3Q96D15 328 aa12.05□□□□□ -0.48
USP4-206ENST00000461553 TPD52L3Q96J77 140 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms