RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 RPL24P83731 157 aaKnown RBP12.31□□□□□ -0.44
USP40-208ENST00000450966 NR0B2Q15466 257 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 C6orf120Q7Z4R8 191 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 FAM26EQ8N5C1 309 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 OR4K14Q8NGD5 310 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 PSMF1Q92530 271 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 HRASLSQ9HDD0 168 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 PRTFDC1Q9NRG1 225 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 MBD1Q9UIS9 605 aaPredicted RBP12.31□□□□□ -0.44
USP40-208ENST00000450966 GJD2Q9UKL4 321 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 SLC7A11Q9UPY5 501 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 ADAMTS4O75173 837 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 HPNP05981 417 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 LPLP06858 475 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 HOXA9P31269 272 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 TGFBR1P36897 503 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 RAB28P51157 221 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 SRPXP78539 464 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 GBX1Q14549 363 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 OR8G1Q15617 311 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 CLLU1OSQ5K130 101 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 PTCRAQ6ISU1 281 aaPredicted RBP12.31□□□□□ -0.44
USP40-208ENST00000450966 TECPR1Q7Z6L1 1165 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 CLECL1Q8IZS7 167 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 HOXB13Q92826 284 aaPredicted RBP12.31□□□□□ -0.44
USP40-208ENST00000450966 SLC6A14Q9UN76 642 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 ENTPD2Q9Y5L3 495 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 ZNF727A8MUV8 499 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 ITGBL1O95965 494 aaPredicted RBP12.31□□□□□ -0.44
USP40-208ENST00000450966 MTHFD2P13995 350 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 ECI1P42126 302 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 ERVPABLB-1P60509 514 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 SLC7A9P82251 487 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 Q6ZN92 141 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 OR52B6Q8NGF0 335 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 OIT3Q8WWZ8 545 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 NINJ1Q92982 152 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 GNPNAT1Q96EK6 184 aaPredicted RBP12.31□□□□□ -0.44
USP40-208ENST00000450966 SGPP1Q9BX95 441 aa12.31□□□□□ -0.44
USP40-208ENST00000450966 MS4A7Q9GZW8 240 aaPredicted RBP12.31□□□□□ -0.44
USP40-208ENST00000450966 BTAF1O14981 1849 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 ZNF320A2RRD8 509 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 CEBPZOSA8MTT3 80 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 CLDN34H7C241 214 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 EIF3GO75821 320 aaKnown RBP eCLIP12.3□□□□□ -0.44
USP40-208ENST00000450966 FBLP22087 321 aaKnown RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 ENPP1P22413 925 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 CDKN2DP55273 166 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 IAH1Q2TAA2 248 aaPredicted RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 GLCCI1Q86VQ1 547 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 GALNT16Q8N428 558 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 LMNTD1Q8N9Z9 388 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 ISG20Q96AZ6 181 aaKnown RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 MMABQ96EY8 250 aaPredicted RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 TEX101Q9BY14 249 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 COL22A1Q8NFW1 1626 aaPredicted RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 MYH2Q9UKX2 1941 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 CD300LBA8K4G0 201 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 PMP2P02689 132 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 STATHP02808 62 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 CHRM4P08173 479 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 RPS15AP62244 130 aaKnown RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 FAM189BP81408 668 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 HOXC5Q00444 222 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 PGGHGQ32M88 737 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 ABHD12BQ7Z5M8 362 aaPredicted RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 TRAPPC6BQ86SZ2 158 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 C11orf42Q8N5U0 333 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 CLDN19Q8N6F1 224 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 SHARPINQ9H0F6 387 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 GSN-AS1Q9NRJ2 163 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 SLC35D1Q9NTN3 355 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 UQCC1Q9NVA1 299 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 OR5H15A6NDH6 313 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 OR5H1A6NKK0 313 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 POU3F3P20264 500 aaPredicted RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 GLYR1Q49A26 553 aaPredicted RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 OR6K3Q8NGY3 331 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 OR4K15Q8NH41 348 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 DAZLQ92904 295 aaKnown RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 FAM210BQ96KR6 192 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 PRRC1Q96M27 445 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 G6PC3Q9BUM1 346 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 ZFP92A6NM28 416 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 ZNF729A6NN14 1252 aaPredicted RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 C17orf112F2Z3M2 114 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 TTRP02766 147 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 STAG3L2P0CL84 134 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 HOXA11P31270 313 aaPredicted RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 HBG1P69891 147 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 HBG2P69892 147 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 DGCR2P98153 550 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 SOWAHCQ53LP3 525 aaPredicted RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 GLDNQ6ZMI3 551 aaPredicted RBP12.3□□□□□ -0.44
USP40-208ENST00000450966 OR8U1Q8NH10 309 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 C1QTNF2Q9BXJ5 285 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 SLC17A9Q9BYT1 436 aa12.3□□□□□ -0.44
USP40-208ENST00000450966 PRF1P14222 555 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 KIAA0319Q5VV43 1072 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 ANKRD33Q7Z3H0 272 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms