RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 C11orf40Q8WZ69 217 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 GCDHQ92947 438 aaPredicted RBP11.42□□□□□ -0.58
HMGB3-204ENST00000448905 LRRC37BQ96QE4 947 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 OR52B2Q96RD2 323 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 C1orf198Q9H425 327 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 NARFLQ9H6Q4 476 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 RNF121Q9H920 327 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 SLC52A3Q9NQ40 469 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 SLCO1C1Q9NYB5 712 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 TREM2Q9NZC2 230 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 GLTPQ9NZD2 209 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.42□□□□□ -0.58
HMGB3-204ENST00000448905 PCDHB10Q9UN67 800 aa11.42□□□□□ -0.58
HMGB3-204ENST00000448905 V9GYY5 206 aaPredicted RBP11.42□□□□□ -0.58
HMGB3-204ENST00000448905 HEATR1Q9H583 2144 aaKnown RBP11.42□□□□□ -0.58
HMGB3-204ENST00000448905 A0A0B4J2E0 115 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 A0A1B0GX12 115 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 TRIM77I1YAP6 450 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 MGRN1O60291 552 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 TPST1O60507 370 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 SERPINI2O75830 405 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 HPRP00739 348 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 BGLAPP02818 100 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 GAAP10253 952 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 ARAFP10398 606 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 CFPP27918 469 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 CDH12P55289 794 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 BIDP55957 195 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 ACTG1P63261 375 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 PLP2Q04941 152 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 SCARB2Q14108 478 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 LRIF1Q5T3J3 769 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 RGS7BPQ6MZT1 257 aaPredicted RBP11.41□□□□□ -0.58
HMGB3-204ENST00000448905 TMEM53Q6P2H8 277 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 EPGNQ6UW88 154 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 SKA3Q8IX90 412 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 SLC22A24Q8N4F4 322 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 OR6X1Q8NH79 312 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 SYNPRQ8TBG9 265 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 SNX33Q8WV41 574 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 ZNF566Q969W8 418 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 ZBTB9Q96C00 473 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 ZMYND19Q96E35 227 aaPredicted RBP11.41□□□□□ -0.58
HMGB3-204ENST00000448905 ZNF75AQ96N20 296 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 RACGAP1Q9H0H5 632 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 TMEM38AQ9H6F2 299 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 CDH20Q9HBT6 801 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 LPAR2Q9HBW0 351 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 HINT3Q9NQE9 182 aaKnown RBP11.41□□□□□ -0.58
HMGB3-204ENST00000448905 ZNF275Q9NSD4 429 aaPredicted RBP11.41□□□□□ -0.58
HMGB3-204ENST00000448905 DECR2Q9NUI1 292 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 TAAR3PQ9P1P4 343 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 FZR1Q9UM11 496 aa11.41□□□□□ -0.58
HMGB3-204ENST00000448905 IQCMA0A1B0GVH7 501 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 POLR3GO15318 223 aaPredicted RBP11.4□□□□□ -0.58
HMGB3-204ENST00000448905 TPD52L2O43399 206 aaKnown RBP11.4□□□□□ -0.58
HMGB3-204ENST00000448905 FMO6PO60774 539 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 VENTXO95231 258 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 NAT2P11245 290 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 KLF3P57682 345 aaPredicted RBP11.4□□□□□ -0.58
HMGB3-204ENST00000448905 MAD2L1BPQ15013 274 aaPredicted RBP11.4□□□□□ -0.58
HMGB3-204ENST00000448905 SLC36A2Q495M3 483 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 ZNF613Q6PF04 617 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 TTC33Q6PID6 262 aaPredicted RBP11.4□□□□□ -0.58
HMGB3-204ENST00000448905 BLOC1S3Q6QNY0 202 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 UNQ6126/PRO20091Q6UXV3 157 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 NHLRC1Q6VVB1 395 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 USP43Q70EL4 1123 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 SLC35D2Q76EJ3 337 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 LRP11Q86VZ4 500 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.4□□□□□ -0.58
HMGB3-204ENST00000448905 HIPK4Q8NE63 616 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 SLC30A7Q8NEW0 376 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 SGMS2Q8NHU3 365 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 ZNF519Q8TB69 540 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 SPDL1Q96EA4 605 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 SLC25A44Q96H78 314 aaPredicted RBP11.4□□□□□ -0.58
HMGB3-204ENST00000448905 MOGAT1Q96PD6 335 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 MCHR1Q99705 422 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 KCNN2Q9H2S1 579 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 TCF7L2Q9NQB0 619 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 NKIRAS2Q9NYR9 191 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 CCDC167Q9P0B6 97 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.4□□□□□ -0.58
HMGB3-204ENST00000448905 ANGPT4Q9Y264 503 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 GMEB1Q9Y692 573 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 USH1CQ9Y6N9 552 aa11.4□□□□□ -0.58
HMGB3-204ENST00000448905 C17orf100A8MU93 164 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 C11orf98E9PRG8 122 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 RNF13O43567 381 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 SPRY1O43609 319 aaPredicted RBP11.39□□□□□ -0.59
HMGB3-204ENST00000448905 PNPP00491 289 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 LCKP06239 509 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 GPX2P18283 190 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 DRD4P21917 467 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 CRYBB2P43320 205 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 MRPL19P49406 292 aaKnown RBP11.39□□□□□ -0.59
HMGB3-204ENST00000448905 MAGOHP61326 146 aaKnown RBP11.39□□□□□ -0.59
HMGB3-204ENST00000448905 LMO4P61968 165 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 RBBP4Q09028 425 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms