RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 FAM81AQ8TBF8 368 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 LIPHQ8WWY8 451 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 SAMD8Q96LT4 415 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 APOL4Q9BPW4 351 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 IFT27Q9BW83 186 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 TSSK6Q9BXA6 273 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 ANKRD60Q9BZ19 345 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 PLA2G12AQ9BZM1 189 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 GRIP2Q9C0E4 1043 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 PIGMQ9H3S5 423 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 SLC25A19Q9HC21 320 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 FAM118AQ9NWS6 357 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 MRPL39Q9NYK5 338 aaKnown RBP10.78□□□□□ -0.68
PTPRF-208ENST00000437607 HIF3AQ9Y2N7 669 aa10.78□□□□□ -0.68
PTPRF-208ENST00000437607 LOC100130705A0A1B0GUX0 176 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 A0A1W2PNV4 684 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 ZAR1LA6NP61 321 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 KIAA1324LA8MWY0 1029 aaPredicted RBP10.77□□□□□ -0.69
PTPRF-208ENST00000437607 FTCDNL1E5RQL4 147 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 BLOC1S5-TXNDC5H3BN57 136 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 RNF13O43567 381 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 DNPH1O43598 174 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 EIF1BO60739 113 aaKnown RBP10.77□□□□□ -0.69
PTPRF-208ENST00000437607 FZD7O75084 574 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 ADORA3P0DMS8 318 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 ZNF708P17019 499 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 CCKARP32238 428 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 GGT2P36268 569 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 EIF1AXP47813 144 aaKnown RBP10.77□□□□□ -0.69
PTPRF-208ENST00000437607 RPS6KA3P51812 740 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 CLDN20P56880 219 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 ADARB1P78563 741 aaKnown RBP10.77□□□□□ -0.69
PTPRF-208ENST00000437607 PUDPQ08623 228 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 ALG10Q5BKT4 473 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 CASP12Q6UXS9 341 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 TMPPEQ6ZT21 453 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 GGNQ86UU5 652 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 DEPDC4Q8N2C3 294 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 LRRC17Q8N6Y2 441 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 OR8D4Q8NGM9 314 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 TFAP2CQ92754 450 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 STARD4Q96DR4 205 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 PLEKHA8Q96JA3 519 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 CNBD2Q96M20 576 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 WFIKKN1Q96NZ8 548 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 SLC38A2Q96QD8 506 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 GPX7Q96SL4 187 aaPredicted RBP10.77□□□□□ -0.69
PTPRF-208ENST00000437607 MDFIQ99750 246 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 TIGARQ9NQ88 270 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 IL20Q9NYY1 176 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 BAIAP2Q9UQB8 552 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 TRAPPC4Q9Y296 219 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 LRCH1Q9Y2L9 728 aa10.77□□□□□ -0.69
PTPRF-208ENST00000437607 YLPM1P49750 1951 aaKnown RBP10.77□□□□□ -0.69
PTPRF-208ENST00000437607 SONP18583 2426 aaKnown RBP10.77□□□□□ -0.69
PTPRF-208ENST00000437607 A0A0J9YW62 118 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 MCIDASD6RGH6 385 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 C11orf98E9PRG8 122 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 H7C1Q1 480 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 SLC16A6O15403 523 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 SERPINI2O75830 405 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 AKR7A3O95154 331 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 PPP1R3DO95685 299 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 TP53P04637 393 aaPredicted RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 IGFBP1P08833 259 aaPredicted RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 AHCYP23526 432 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 LOXP28300 417 aaPredicted RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 EPHA2P29317 976 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 NOS3P29474 1203 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 GRK5P34947 590 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 POLR2IP36954 125 aaKnown RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 AQP2P41181 271 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 CLDN15P56746 228 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 FXYD6P3P58550 94 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 IL5RAQ01344 420 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 RPL18Q07020 188 aaKnown RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 TOP3AQ13472 1001 aaPredicted RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 MED21Q13503 144 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 GINS1Q14691 196 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 PTGES3Q15185 160 aaKnown RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 CTU2Q2VPK5 515 aaKnown RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 SLX4IPQ5VYV7 408 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 VWA1Q6PCB0 445 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 ZNF474Q6S9Z5 364 aaPredicted RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 PAQR6Q6TCH4 344 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 THSD4Q6ZMP0 1018 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 C22orf34Q6ZV56 151 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 H1FNTQ75WM6 255 aaPredicted RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 CHMP1BQ7LBR1 199 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 IGFN1Q86VF2 1251 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 LRRC75A-AS1Q8N1F1 130 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 OR10D3Q8NH80 312 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 MOSPD2Q8NHP6 518 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 CPNE4Q96A23 557 aaPredicted RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 ADGRG7Q96K78 797 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 HRASLS5Q96KN8 279 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 TNFRSF13CQ96RJ3 184 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 NAA11Q9BSU3 229 aaPredicted RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 KATNB1Q9BVA0 655 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 INIPQ9NRY2 104 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms