RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 RBMY1EA6NEQ0 496 aaKnown RBP4.3□□□□□ -1.72
USP54-206ENST00000433394 A8MUA0 341 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 PPP1R2P9O14990 202 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 EMC8O43402 210 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 GAPDHP04406 335 aaKnown RBP4.3□□□□□ -1.72
USP54-206ENST00000433394 RBMY1DP0C7P1 496 aaKnown RBP4.3□□□□□ -1.72
USP54-206ENST00000433394 RBMY1A1P0DJD3 496 aaKnown RBP4.3□□□□□ -1.72
USP54-206ENST00000433394 ICAM2P13598 275 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 GALP22466 123 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 CD1BP29016 333 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 ANP32AP39687 249 aaKnown RBP4.3□□□□□ -1.72
USP54-206ENST00000433394 SLC26A3P40879 764 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 RFX3P48380 749 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 CDH6P55285 790 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 C21orf59P57076 290 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 TGM3Q08188 693 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 B3GNT7Q8NFL0 401 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 OR7G2Q8NG99 324 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 LINC01006Q8NI28 216 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 NEIL3Q8TAT5 605 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 FAM110BQ8TC76 370 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 CCDC126Q96EE4 140 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 PHYHIPLQ96FC7 376 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 TMEM101Q96IK0 257 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 MS4A4EQ96PG1 132 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 MBOAT4Q96T53 435 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 NRIP2Q9BQI9 281 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 QPCTLQ9NXS2 382 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 TSPOAP1O95153 1857 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 PZPP20742 1482 aa4.3□□□□□ -1.72
USP54-206ENST00000433394 ARHGAP31Q2M1Z3 1444 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 USP47Q96K76 1375 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 FRMPD1Q5SYB0 1578 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 DIP2CQ9Y2E4 1556 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 A0A1W2PPV9 198 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 LRRIQ3A6PVS8 624 aaPredicted RBP4.29□□□□□ -1.72
USP54-206ENST00000433394 TRIM49D1C9J1S8 452 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 CASQ2O14958 399 aaPredicted RBP4.29□□□□□ -1.72
USP54-206ENST00000433394 SUPT7LO94864 414 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 HPNP05981 417 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 HNRNPH3P31942 346 aaKnown RBP4.29□□□□□ -1.72
USP54-206ENST00000433394 FOXN2P32314 431 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 LYZP61626 148 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 SLC8B1Q6J4K2 584 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 ZNF620Q6ZNG0 422 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 BZW1Q7L1Q6 419 aaKnown RBP4.29□□□□□ -1.72
USP54-206ENST00000433394 LUZP2Q86TE4 346 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 TMEM135Q86UB9 458 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 ZNF584Q8IVC4 421 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 CEND1Q8N111 149 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 C6orf223Q8N319 242 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 LIX1Q8N485 282 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 PNKDQ8N490 385 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 RHEBL1Q8TAI7 183 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 SLC22A8Q8TCC7 542 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 CXorf40AQ8TE69 158 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 IMMP1LQ96LU5 166 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 EXO5Q9H790 373 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 NANOGQ9H9S0 305 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 LY9Q9HBG7 655 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 ZNF160Q9HCG1 818 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 RABL2AQ9UBK7 228 aaPredicted RBP4.29□□□□□ -1.72
USP54-206ENST00000433394 GNPTGQ9UJJ9 305 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 PITPNC1Q9UKF7 332 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 CNTLNQ9NXG0 1405 aa4.29□□□□□ -1.72
USP54-206ENST00000433394 ABCA6Q8N139 1617 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 CDHR2Q9BYE9 1310 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 EFCAB6Q5THR3 1501 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 WRBO00258 174 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 CDH16O75309 829 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 PABPC4LP0CB38 370 aaKnown RBP4.28□□□□□ -1.72
USP54-206ENST00000433394 CALM1P0DP23 149 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 CALM2P0DP24 149 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 CALM3P0DP25 149 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 CD1EP15812 388 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 HTR1EP28566 365 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 OTX1P32242 354 aaPredicted RBP4.28□□□□□ -1.72
USP54-206ENST00000433394 PEX19P40855 299 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 SH3BGRP55822 239 aaPredicted RBP4.28□□□□□ -1.72
USP54-206ENST00000433394 YWHAGP61981 247 aaKnown RBP eCLIP4.28□□□□□ -1.72
USP54-206ENST00000433394 PDIA2Q13087 525 aaKnown RBP4.28□□□□□ -1.72
USP54-206ENST00000433394 PPIL2Q13356 520 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 IL18Q14116 193 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 PAGE3Q5JUK9 113 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 C9orf135Q5VTT2 229 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 OTPQ5XKR4 325 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 LRRC66Q68CR7 880 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 KRTAP5-11Q6L8G4 156 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 SLC25A48Q6ZT89 311 aaKnown RBP4.28□□□□□ -1.72
USP54-206ENST00000433394 EIF3MQ7L2H7 374 aaKnown RBP4.28□□□□□ -1.72
USP54-206ENST00000433394 PRSS41Q7RTY9 318 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 TGIF2LYQ8IUE0 185 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 TECTBQ96PL2 329 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 TMEM246Q9BRR3 403 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 MTG1Q9BT17 334 aaPredicted RBP4.28□□□□□ -1.72
USP54-206ENST00000433394 C20orf24Q9BUV8 137 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 CALYQ9NYX4 217 aa4.28□□□□□ -1.72
USP54-206ENST00000433394 MTRF1LQ9UGC7 380 aaKnown RBP4.28□□□□□ -1.72
USP54-206ENST00000433394 RAI1Q7Z5J4 1906 aaPredicted RBP4.28□□□□□ -1.72
USP54-206ENST00000433394 PTPRTO14522 1441 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms