RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 UBQLN4Q9NRR5 601 aa7.58□□□□□ -1.2
CD44-208ENST00000428726 KLRF1Q9NZS2 232 aa7.58□□□□□ -1.2
CD44-208ENST00000428726 KLHL13Q9P2N7 655 aa7.58□□□□□ -1.2
CD44-208ENST00000428726 ITGB1BP2Q9UKP3 347 aa7.58□□□□□ -1.2
CD44-208ENST00000428726 MYO7BQ6PIF6 2116 aa7.58□□□□□ -1.2
CD44-208ENST00000428726 CEP295Q9C0D2 2601 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 A0A087WUJ7 227 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 A0A0A6YYJ9 748 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 TRBV11-1A0A0K0K1C0 115 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 SIGLEC5O15389 551 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 PIN1P1O15428 100 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ZNF217O75362 1048 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 PRKAR1AP10644 381 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ANOS1P23352 680 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 RORAP35398 523 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 GNG2P59768 71 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 GUCA2AQ02747 115 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 SIGLEC14Q08ET2 396 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 MESTQ5EB52 335 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 B3GNTL1Q67FW5 361 aaPredicted RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 MZT2AQ6P582 158 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 TMEM205Q6UW68 189 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 TMPRSS12Q86WS5 348 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ZNF595Q8IYB9 648 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ZNF676Q8N7Q3 588 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ZNF417Q8TAU3 575 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 NPRL2Q8WTW4 380 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 LCORQ96JN0 433 aaPredicted RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 TSPAN32Q96QS1 320 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 SNX18Q96RF0 628 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ZNF587Q96SQ5 575 aaPredicted RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 THAP7Q9BT49 309 aaPredicted RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 GAREM1Q9H706 876 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 SLC2A4RGQ9NR83 387 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 CGGBP1Q9UFW8 167 aaPredicted RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 CHRNA9Q9UGM1 479 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 SERTAD3Q9UJW9 196 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 MGAT4AQ9UM21 535 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 TRAV8-7A0A075B6U6 113 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 RAMP1O60894 148 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 FZD7O75084 574 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 SCRG1O75711 98 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 OR2J2O76002 312 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 IFNGP01579 166 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 HEXBP07686 556 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 GIMD1P0DJR0 217 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ZNF250P15622 560 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 RAB3BP20337 219 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 CCKBRP32239 447 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 FASLGP48023 281 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 GABRA4P48169 554 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 EVX1P49640 407 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 AFF3P51826 1226 aaKnown RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 SIRPAP78324 504 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ASAH1Q13510 395 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 COL28A1Q2UY09 1125 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 TMEM255AQ5JRV8 349 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 NDUFAF7Q7L592 441 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ZNF550Q7Z398 422 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 RNF144BQ7Z419 303 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 LSMEM1Q8N8F7 131 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 SUN5Q8TC36 379 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ZNF721Q8TF20 911 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 PGLYRP3Q96LB9 341 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 SOX7Q9BT81 388 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 G6PC3Q9BUM1 346 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ZNF426Q9BUY5 554 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 SLCO1C1Q9NYB5 712 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 LAMP5Q9UJQ1 280 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 PCNX1Q96RV3 2341 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 TECTAO75443 2155 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 I3L521 148 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 TNFRSF10AO00220 468 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 RGS13O14921 159 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 SEC14L5O43304 696 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 DUX1O43812 170 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 TRIM3O75382 744 aaPredicted RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 KDM4BO94953 1096 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 CTLA4P16410 223 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 CD53P19397 219 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 PTBP1P26599 531 aaKnown RBP eCLIP7.57□□□□□ -1.23e-6■■■■■ 30.2
CD44-208ENST00000428726 PRKXP51817 358 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 PSMD4P55036 377 aaKnown RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 LGALS3BPQ08380 585 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 CAMK2DQ13557 499 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 GPR176Q14439 515 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 EBPQ15125 230 aaKnown RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 ZNF141Q15928 474 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ACKR1Q16570 336 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 YIF1BQ5BJH7 314 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 GLB1L2Q8IW92 636 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 GPALPP1Q8IXQ4 340 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 OR10G3Q8NGC4 313 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 OR11H4Q8NGC9 324 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 TSEN15Q8WW01 171 aaKnown RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 UBL7Q96S82 380 aaPredicted RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 MMP25Q9NPA2 562 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 COPS7AQ9UBW8 275 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 PPIEQ9UNP9 301 aaKnown RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 B9D1Q9UPM9 204 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms