RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 MYO7BQ6PIF6 2116 aa8.98□□□□□ -0.97
CD44-207ENST00000425428 PRSS37A4D1T9 235 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 ZNF587BE7ETH6 402 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 SURF4O15260 269 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 TRAF3IP2O43734 574 aaPredicted RBP8.97□□□□□ -0.97
CD44-207ENST00000425428 TLX2O43763 284 aaPredicted RBP8.97□□□□□ -0.97
CD44-207ENST00000425428 SMNDC1O75940 238 aaKnown RBP eCLIP8.97□□□□□ -0.97
CD44-207ENST00000425428 WISP2O76076 250 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 CNOT4O95628 575 aaKnown RBP8.97□□□□□ -0.97
CD44-207ENST00000425428 IL18BPO95998 194 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 STSP08842 583 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 GLI4P10075 376 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 HLA-DOBP13765 273 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 HIST1H1CP16403 213 aaKnown RBP8.97□□□□□ -0.97
CD44-207ENST00000425428 ATP6V1E1P36543 226 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 P2RY4P51582 365 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 MED21Q13503 144 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 TCEANCQ8N8B7 351 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 LRRC75AQ8NAA5 344 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 C9orf106Q8NAJ2 232 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 NOXO1Q8NFA2 376 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 OR8D4Q8NGM9 314 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 RASD2Q96D21 266 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 TXNDC15Q96J42 360 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 MYCBPQ99417 103 aaPredicted RBP8.97□□□□□ -0.97
CD44-207ENST00000425428 EMC6Q9BV81 110 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 ULBP2Q9BZM5 246 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 B3GAT1Q9P2W7 334 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 ZNF629Q9UEG4 869 aaPredicted RBP8.97□□□□□ -0.97
CD44-207ENST00000425428 NDRG4Q9ULP0 352 aaKnown RBP8.97□□□□□ -0.97
CD44-207ENST00000425428 ITPR1Q14643 2758 aa8.97□□□□□ -0.97
CD44-207ENST00000425428 INTS1Q8N201 2190 aaKnown RBP8.97□□□□□ -0.97
CD44-207ENST00000425428 ZNF814B7Z6K7 855 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 RAMP1O60894 148 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 TMCC2O75069 709 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 TRMUO75648 421 aaKnown RBP8.96□□□□□ -0.97
CD44-207ENST00000425428 FARS2O95363 451 aaKnown RBP8.96□□□□□ -0.97
CD44-207ENST00000425428 HLA-DQA2P01906 255 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 IGFBP1P08833 259 aaPredicted RBP8.96□□□□□ -0.97
CD44-207ENST00000425428 HOXC12P31275 282 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 GLO1Q04760 184 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 MRPL49Q13405 166 aaKnown RBP8.96□□□□□ -0.97
CD44-207ENST00000425428 KLHL12Q53G59 568 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 ARMC4Q5T2S8 1044 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 C6orf52Q5T4I8 152 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 C12orf73Q69YU5 71 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 ACSM5Q6NUN0 579 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 BEND4Q6ZU67 534 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 CXXC5Q7LFL8 322 aaKnown RBP8.96□□□□□ -0.97
CD44-207ENST00000425428 FAM122BQ7Z309 247 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 THAP5Q7Z6K1 395 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 FJX1Q86VR8 437 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 CHERPQ8IWX8 916 aaKnown RBP8.96□□□□□ -0.97
CD44-207ENST00000425428 SYT14Q8NB59 555 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 SDR9C7Q8NEX9 313 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 PROKR2Q8NFJ6 384 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 OR4Q3Q8NH05 313 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 TMEM163Q8TC26 289 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 TFAP2CQ92754 450 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 ZNF385AQ96PM9 386 aaKnown RBP8.96□□□□□ -0.97
CD44-207ENST00000425428 OR2M2Q96R28 347 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 MBOAT4Q96T53 435 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 NMNAT3Q96T66 252 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 PITX2Q99697 317 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 RPRD1BQ9NQG5 326 aaKnown RBP8.96□□□□□ -0.97
CD44-207ENST00000425428 GLTPQ9NZD2 209 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.96□□□□□ -0.97
CD44-207ENST00000425428 MOKQ9UQ07 419 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 FAM215AQ9Y5M1 114 aa8.96□□□□□ -0.97
CD44-207ENST00000425428 IRGMA1A4Y4 181 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 SLC22A31A6NKX4 558 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 KHDRBS3O75525 346 aaKnown RBP8.96□□□□□ -0.98
CD44-207ENST00000425428 TP53P04637 393 aaPredicted RBP8.96□□□□□ -0.98
CD44-207ENST00000425428 CEACAM8P31997 349 aaPredicted RBP8.96□□□□□ -0.98
CD44-207ENST00000425428 OR3A2P47893 321 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 SELENOPP49908 381 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 SH3BGRP55822 239 aaPredicted RBP8.96□□□□□ -0.98
CD44-207ENST00000425428 FXYD6P3P58550 94 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 CSNK2BP67870 215 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 FHL1Q13642 323 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 ZNF691Q5VV52 312 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 OR10H5Q8NGA6 315 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 ZNF519Q8TB69 540 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 CNBD2Q96M20 576 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 IL4I1Q96RQ9 567 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 CDADC1Q9BWV3 514 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 RBM24Q9BX46 236 aaKnown RBP8.96□□□□□ -0.98
CD44-207ENST00000425428 LINC00470Q9BZP3 86 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 SRA1Q9HD15 236 aaKnown RBP8.96□□□□□ -0.98
CD44-207ENST00000425428 RASSF1Q9NS23 344 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 SCN3BQ9NY72 215 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 ERRFI1Q9UJM3 462 aaPredicted RBP8.96□□□□□ -0.98
CD44-207ENST00000425428 BLOC1S6Q9UL45 172 aa8.96□□□□□ -0.98
CD44-207ENST00000425428 FAM208BQ5VWN6 2430 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 CIB4A0PJX0 185 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 SLC22A23A1A5C7 686 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 EEF1E1-BLOC1S5C9J1V9 151 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 PRODHO43272 600 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 LRRTM2O43300 516 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 EEF1E1O43324 174 aaKnown RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms