RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 RAMP1O60894 148 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 CDK1P06493 297 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 SMIM18P0DKX4 95 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 MYL12AP19105 171 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 CRABP1P29762 137 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 CENPAP49450 140 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 RASGEF1BQ0VAM2 473 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 LINC00303Q3SY05 128 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 ZNF362Q5T0B9 420 aaPredicted RBP15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 ABLIM2Q6H8Q1 611 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 PRSS48Q7RTY5 328 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 P4HA3Q7Z4N8 544 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 SIAH3Q8IW03 269 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 OR51G2Q8NGK0 314 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 ZPLD1Q8TCW7 415 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 PTP4A1Q93096 173 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 WDYHV1Q96HA8 205 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 TMEM80Q96HE8 168 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 TXNDC15Q96J42 360 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 RBP7Q96R05 134 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 RHNO1Q9BSD3 238 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 ALG12Q9BV10 488 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 EMC6Q9BV81 110 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 HCAR1Q9BXC0 346 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 SRA1Q9HD15 236 aaKnown RBP15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 PAK1IP1Q9NWT1 392 aaPredicted RBP15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 EMC3Q9P0I2 261 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 KLHL9Q9P2J3 617 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 MOKQ9UQ07 419 aa15.27■□□□□ 0.04
CCDC28B-202ENST00000421922 SMG1Q96Q15 3661 aaKnown RBP15.27■□□□□ 0.03
CCDC28B-202ENST00000421922 TRIM64A6NGJ6 449 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 AHCYL1O43865 530 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 CYTIPO60759 359 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 TRMUO75648 421 aaKnown RBP15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 MT-ND2P03891 347 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 STSP08842 583 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 CLUP10909 449 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 FCGR2AP12318 317 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 PIGFQ07326 219 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 CAMK2DQ13557 499 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 SLC17A1Q14916 467 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 C19orf48Q6RUI8 117 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 CREB3L2Q70SY1 520 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 SYT14Q8NB59 555 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 NOXO1Q8NFA2 376 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 OR6X1Q8NH79 312 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 FNDC8Q8TC99 324 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 SLC25A44Q96H78 314 aaPredicted RBP15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 TEAD3Q99594 435 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 ASB6Q9NWX5 421 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 VSX1Q9NZR4 365 aaPredicted RBP15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 PCDHGB1Q9Y5G3 927 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 COMMD3-BMI1R4GMX3 469 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 SLC22A23A1A5C7 686 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 SLC35F4A4IF30 521 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 OR14I1A6ND48 311 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 GPR171O14626 319 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 SLC16A7O60669 478 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 GLCEO94923 617 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 SFTPCP11686 197 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 SLC2A5P22732 501 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 GSTT1P30711 240 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 PYCR1P32322 319 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 SLC15A1P46059 708 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 BLMHQ13867 455 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 RNPS1Q15287 305 aaKnown RBP15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 SF3B4Q15427 424 aaKnown RBP eCLIP15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 KRTCAP3Q53RY4 240 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 CARD17Q5XLA6 110 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 POMGNT2Q8NAT1 580 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 OR51L1Q8NGJ5 315 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 OR6N1Q8NGY5 312 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 SGCDQ92629 289 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 LGALS12Q96DT0 336 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 ZMYND19Q96E35 227 aaPredicted RBP15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 CRELD1Q96HD1 420 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 GPR137Q96N19 417 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 KCNK17Q96T54 332 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 CNN2Q99439 309 aaKnown RBP15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 NMNAT2Q9BZQ4 307 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 PRDM14Q9GZV8 571 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 PRORYQ9H606 182 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 FKBP14Q9NWM8 211 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 FKBP7Q9Y680 259 aa15.26■□□□□ 0.03
CCDC28B-202ENST00000421922 A0A1B0GTH9 108 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 CCDC182A6NF36 153 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 SLC22A20A6NK97 555 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 CENPBD1B2RD01 187 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 MYL12BO14950 172 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 APOL3O95236 402 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 HLA-DQA2P01906 255 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 MRPL3P09001 348 aaKnown RBP15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 DCKP27707 260 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 CSNK1A1P48729 337 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 BLVRAP53004 296 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 NR1H2P55055 460 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 MVKQ03426 396 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 NEDD8Q15843 81 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 KCTD8Q6ZWB6 473 aa15.25■□□□□ 0.03
CCDC28B-202ENST00000421922 SPARTQ8N0X7 666 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms