RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 PNLDC1Q8NA58 520 aaKnown RBP7.78□□□□□ -1.16
SYNE1-211ENST00000413186 OR13F1Q8NGS4 319 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 C1orf216Q8TAB5 229 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 APOBEC4Q8WW27 367 aaKnown RBP7.78□□□□□ -1.16
SYNE1-211ENST00000413186 BSCL2Q96G97 398 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-211ENST00000413186 CCDC120Q96HB5 630 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 ULBP2Q9BZM5 246 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 OR10A4Q9H209 315 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 MMP25Q9NPA2 562 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 PI4KAP42356 2102 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 MRPL3P09001 348 aaKnown RBP7.78□□□□□ -1.16
SYNE1-211ENST00000413186 CT62P0C5K7 136 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 SLC2A2P11168 524 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-211ENST00000413186 GRPRP30550 384 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 EMDP50402 254 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 DSCR4P56555 118 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-211ENST00000413186 WNT4P56705 351 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 PCBD1P61457 104 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 RPS18P62269 152 aaKnown RBP7.78□□□□□ -1.16
SYNE1-211ENST00000413186 PPIAP62937 165 aaKnown RBP7.78□□□□□ -1.16
SYNE1-211ENST00000413186 MADCAM1Q13477 382 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 C17orf47Q8NEP4 570 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 SLC7A13Q8TCU3 470 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 BRIX1Q8TDN6 353 aaKnown RBP7.78□□□□□ -1.16
SYNE1-211ENST00000413186 TMEM255BQ8WV15 326 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 FAM122AQ96E09 287 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 VSTM2LQ96N03 204 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 PITX2Q99697 317 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 PDCD1LG2Q9BQ51 273 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 GPR27Q9NS67 375 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 SLC6A13Q9NSD5 602 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 COMMD3Q9UBI1 195 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 HDGFL3Q9Y3E1 203 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 KIAA1671Q9BY89 1806 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 C2orf72A6NCS6 295 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 PRSS44E7EML9 344 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 BHLHE40O14503 412 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 DNAJB6O75190 326 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 SLC34A2O95436 690 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 OPN1LWP04000 364 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 HTR2BP41595 481 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 DAPP51397 102 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 CAPZA1P52907 286 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 EMX1Q04741 257 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-211ENST00000413186 ZNF141Q15928 474 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 ZNF658BQ4V348 819 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-211ENST00000413186 IDNKQ5T6J7 187 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 MFSD8Q8NHS3 518 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 TMEM163Q8TC26 289 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 ZNF566Q969W8 418 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 TNFRSF13CQ96RJ3 184 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 KATNB1Q9BVA0 655 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 FKRPQ9H9S5 495 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 MOKQ9UQ07 419 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 A3GALT2U3KPV4 340 aa7.78□□□□□ -1.16
SYNE1-211ENST00000413186 PTBP3O95758 552 aaKnown RBP7.77□□□□□ -1.17
SYNE1-211ENST00000413186 TPOP07202 933 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 SLC37A1P57057 533 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 RNASE12Q5GAN4 147 aaKnown RBP7.77□□□□□ -1.17
SYNE1-211ENST00000413186 KRBOX4Q5JUW0 171 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 ZNF705AQ6ZN79 300 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-211ENST00000413186 FTMTQ8N4E7 242 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 CYB561A3Q8NBI2 242 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 SIMC1Q8NDZ2 872 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 OR11G2Q8NGC1 345 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 OR4N2Q8NGD1 307 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 OR4Q3Q8NH05 313 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 MBD3L1Q8WWY6 194 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 C3orf49Q96BT1 292 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 ITPKCQ96DU7 683 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 MRI1Q9BV20 369 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 MED28Q9H204 178 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 KLHL9Q9P2J3 617 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 EIF3KQ9UBQ5 218 aaKnown RBP7.77□□□□□ -1.17
SYNE1-211ENST00000413186 ARHGEF17Q96PE2 2063 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-211ENST00000413186 TRBV5-3A0A0A0MS03 114 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 PRRG2O14669 202 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 RLN2P04090 185 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 ZNF17P17021 662 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 FCER1GP30273 86 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 AQP2P41181 271 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 ADAM8P78325 824 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 Q1RN00 199 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 TMEM236Q5W0B7 351 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 FAM219BQ5XKK7 198 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 VASH2Q86V25 355 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 RBM45Q8IUH3 476 aaKnown RBP7.77□□□□□ -1.17
SYNE1-211ENST00000413186 CENPSQ8N2Z9 138 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 PTPMT1Q8WUK0 201 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-211ENST00000413186 OR5B12Q96R08 314 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 DMRTA2Q96SC8 542 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 INTS14Q96SY0 518 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 TM9SF2Q99805 663 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 ARHGDIGQ99819 225 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 ZDHHC11Q9H8X9 412 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 PLCXD1Q9NUJ7 323 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 GPR52Q9Y2T5 361 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 LSM5Q9Y4Y9 91 aaKnown RBP7.77□□□□□ -1.17
SYNE1-211ENST00000413186 KCNE3Q9Y6H6 103 aa7.77□□□□□ -1.17
SYNE1-211ENST00000413186 ZFC3H1O60293 1989 aaKnown RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms