RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CENPAP49450 140 aa19.06■□□□□ 0.64
CTCF-202ENST00000401394 CTXN1P60606 82 aa19.06■□□□□ 0.64
CTCF-202ENST00000401394 TMEM88Q6PEY1 159 aa19.06■□□□□ 0.64
CTCF-202ENST00000401394 RTN4RL2Q86UN3 420 aa19.06■□□□□ 0.64
CTCF-202ENST00000401394 OR2M4Q96R27 311 aa19.06■□□□□ 0.64
CTCF-202ENST00000401394 AIFM2Q9BRQ8 373 aa19.06■□□□□ 0.64
CTCF-202ENST00000401394 TINAGL1Q9GZM7 467 aaPredicted RBP19.06■□□□□ 0.64
CTCF-202ENST00000401394 RSPH9Q9H1X1 276 aaPredicted RBP19.06■□□□□ 0.64
CTCF-202ENST00000401394 POFUT1Q9H488 388 aa19.06■□□□□ 0.64
CTCF-202ENST00000401394 GPN1Q9HCN4 374 aaPredicted RBP19.06■□□□□ 0.64
CTCF-202ENST00000401394 ACTR10Q9NZ32 417 aa19.06■□□□□ 0.64
CTCF-202ENST00000401394 MUC22E2RYF6 1773 aaPredicted RBP19.06■□□□□ 0.64
CTCF-202ENST00000401394 SOX1O00570 391 aaPredicted RBP19.05■□□□□ 0.64
CTCF-202ENST00000401394 FGF19O95750 216 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 S1PR1P21453 382 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 POU3F4P49335 361 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 ALKBH1Q13686 389 aaKnown RBP19.05■□□□□ 0.64
CTCF-202ENST00000401394 EXOSC6Q5RKV6 272 aaKnown RBP19.05■□□□□ 0.64
CTCF-202ENST00000401394 ULK3Q6PHR2 472 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 TSSK4Q6SA08 328 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 SLC35F3Q8IY50 421 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 CA13Q8N1Q1 262 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 FARSAQ9Y285 508 aaKnown RBP19.05■□□□□ 0.64
CTCF-202ENST00000401394 A0A0A6YYC8 382 aaPredicted RBP19.05■□□□□ 0.64
CTCF-202ENST00000401394 I3L1I5 382 aaPredicted RBP19.05■□□□□ 0.64
CTCF-202ENST00000401394 TIMP1P01033 207 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 DLX5P56178 289 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 GGTLC2Q14390 218 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 CD226Q15762 336 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 ASPHD2Q6ICH7 369 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 BAIAP2L2Q6UXY1 529 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 LINC00114Q6XXX2 140 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 GALNT16Q8N428 558 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 NT5CQ8TCD5 201 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 CCDC74AQ96AQ1 378 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 NMNAT2Q9BZQ4 307 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 SYT4Q9H2B2 425 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 KCNG2Q9UJ96 466 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 CTAG2O75638 210 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 CCKBRP32239 447 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 TPMTP51580 245 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 NR0B2Q15466 257 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 NKPD1Q17RQ9 610 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 OR4S1Q8NGB4 309 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 SAV1Q9H4B6 383 aaPredicted RBP19.05■□□□□ 0.64
CTCF-202ENST00000401394 STEAP1Q9UHE8 339 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 FBXL3Q9UKT7 428 aa19.05■□□□□ 0.64
CTCF-202ENST00000401394 MAOAP21397 527 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 C3orf49Q96BT1 292 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 CGGBP1Q9UFW8 167 aaPredicted RBP19.04■□□□□ 0.64
CTCF-202ENST00000401394 OR10H1Q9Y4A9 318 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 UBE2QL1A1L167 161 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 C11orf98E9PRG8 122 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 B3GALNT1O75752 331 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 NKX2-2O95096 273 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 RPS21P63220 83 aaKnown RBP19.04■□□□□ 0.64
CTCF-202ENST00000401394 IL10RAQ13651 578 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 OVCH2Q7RTZ1 564 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 NSMAFQ92636 917 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 CTHRC1Q96CG8 243 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 STACQ99469 402 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 SLC38A3Q99624 504 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 ZFYVE21Q9BQ24 234 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 TMEM185BQ9H7F4 350 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 SESN1Q9Y6P5 492 aa19.04■□□□□ 0.64
CTCF-202ENST00000401394 NAP1L6A6NFF2 107 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 H7C417 338 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 ZNF749O43361 778 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 GLCEO94923 617 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 APBB3O95704 486 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 RUNX3Q13761 415 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 RBMS2Q15434 407 aaKnown RBP19.03■□□□□ 0.64
CTCF-202ENST00000401394 MEP1BQ16820 701 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 SLC22A6Q4U2R8 563 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 LY6G6FQ5SQ64 297 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 ARHGAP40Q5TG30 622 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 PDZD9Q8IXQ8 264 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 OR10K1Q8NGX5 313 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 RERGQ96A58 199 aaPredicted RBP19.03■□□□□ 0.64
CTCF-202ENST00000401394 TRIM2Q9C040 744 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 AKAP7Q9P0M2 348 aaPredicted RBP19.03■□□□□ 0.64
CTCF-202ENST00000401394 MTFP1Q9UDX5 166 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 GGT3PA6NGU5 568 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 DNASE2O00115 360 aaPredicted RBP19.03■□□□□ 0.64
CTCF-202ENST00000401394 F12P00748 615 aaPredicted RBP19.03■□□□□ 0.64
CTCF-202ENST00000401394 ZNF28P17035 718 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 C2orf76Q3KRA6 126 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 DPY19L2P2Q6ZN68 376 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 ABHD13Q7L211 337 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 ZNF321PQ8N8H1 164 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 OR2G2Q8NGZ5 317 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 NKD1Q969G9 470 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 KTI12Q96EK9 354 aaPredicted RBP19.03■□□□□ 0.64
CTCF-202ENST00000401394 LRRC46Q96FV0 321 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 RTN4RQ9BZR6 473 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 IFT46Q9NQC8 304 aa19.03■□□□□ 0.64
CTCF-202ENST00000401394 A0A087WUJ7 227 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 BET1O15155 118 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 FOXS1O43638 330 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 ABHD16AO95870 558 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms