RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 GOLGA3Q08378 1498 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 RICTORQ6R327 1708 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 A0A1W2PPI3 338 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 LINC01553A4QN01 128 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ERVV-1B6SEH8 477 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 F8VP50 259 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 H3BMQ9 156 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 GOSR2O14653 212 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 HSD17B6O14756 317 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 KMOO15229 486 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 SYNGR3O43761 229 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 EIF4E2O60573 245 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 PLEKHA8P1O95397 391 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ACTL6AO96019 429 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 CCNE1P24864 410 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 HSD11B1P28845 292 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 VHLP40337 213 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 TGM4P49221 684 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 EMDP50402 254 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 RPL8P62917 257 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF85Q03923 595 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF33BQ06732 778 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 RBBP4Q09028 425 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 TSPAN31Q12999 210 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 KIR2DS3Q14952 304 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 PDK2Q15119 407 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 NDUFA5Q16718 116 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 DUSP7Q16829 419 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 YIF1BQ5BJH7 314 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 SPOPLQ6IQ16 392 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ABHD13Q7L211 337 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 OR2W3Q7Z3T1 314 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 CRLF3Q8IUI8 442 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 APOBEC3FQ8IUX4 373 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 IQCF1Q8N6M8 205 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 NOXO1Q8NFA2 376 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 OR52H1Q8NGJ2 320 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 OR5M1Q8NGP8 315 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 OR6Q1Q8NGQ2 317 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 OR1K1Q8NGR3 316 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 OR10Z1Q8NGY1 313 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 OR6X1Q8NH79 312 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 OR1L3Q8NH93 324 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 LYPD6BQ8NI32 183 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 ADAMTS16Q8TE57 1224 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 PYDC1Q8WXC3 89 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 FAF2Q96CS3 445 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 OMA1Q96E52 524 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 SCMH1Q96GD3 660 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 CELF6Q96J87 481 aaKnown RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 CEP170P1Q96L14 293 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 SLC35A5Q9BS91 424 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 FAM107BQ9H098 131 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 TOLLIPQ9H0E2 274 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 SP140LQ9H930 580 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 BEX1Q9HBH7 125 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 RETNQ9HD89 108 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 C19orf12Q9NSK7 152 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 PLCXD1Q9NUJ7 323 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 CD274Q9NZQ7 290 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 TCF19Q9Y242 345 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 PRG3Q9Y2Y8 225 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-204ENST00000399489 HYOU1Q9Y4L1 999 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 GMPPBQ9Y5P6 360 aa3.47□□□□□ -1.85
HMGB1-204ENST00000399489 IGHV2-70DA0A0C4DH43 119 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 hCG_38984A0A1B0GV85 526 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 TCRBV9S1A1TA0A576 114 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 TCP10L2B9ZVM9 353 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 ZNF587BE7ETH6 402 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 STX10O60499 249 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 LDOC1O95751 146 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-204ENST00000399489 HPP00738 406 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 RPS17P08708 135 aaKnown RBP3.46□□□□□ -1.86
HMGB1-204ENST00000399489 GNAO1P09471 354 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 ABOP16442 354 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 HLA-GP17693 338 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 PSMC3P17980 439 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 M6PRP20645 277 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 C4BPBP20851 252 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 SAA4P35542 130 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 GCKP35557 465 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 TNFSF9P41273 254 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 RPL14P50914 215 aaKnown RBP3.46□□□□□ -1.86
HMGB1-204ENST00000399489 UBE2KP61086 200 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 PITPNAQ00169 270 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 LTBQ06643 244 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 OR4D1Q15615 310 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 CALCRLQ16602 461 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 KCTD19Q17RG1 926 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-204ENST00000399489 BSPRYQ5W0U4 402 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 C3orf33Q6P1S2 294 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 SPESP1Q6UW49 350 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 TMEM207Q6UWW9 146 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 STAC2Q6ZMT1 411 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 C9orf139Q6ZV77 190 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 SETD3Q86TU7 594 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-204ENST00000399489 PIGZQ86VD9 579 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 ZBED8Q8IZ13 594 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 KIRREL3Q8IZU9 778 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 SPAG16Q8N0X2 631 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms