RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ZNF90Q03938 601 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 ADGRE4PQ86SQ3 457 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 PELI3Q8N2H9 469 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 PAAF1Q9BRP4 392 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 WDR76Q9H967 626 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 PARD6AQ9NPB6 346 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 STARD5Q9NSY2 213 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 RAB22AQ9UL26 194 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 CHST2Q9Y4C5 530 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 LOC102725191A0A1B0GVB3 256 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 CTRB1P17538 263 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 CD70P32970 193 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 OR10A3P58181 314 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 CLDN10P78369 228 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 SERTAD2Q14140 314 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 CTRB2Q6GPI1 263 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 ZFP62Q8NB50 900 aaPredicted RBP10.97□□□□□ -0.65
SYNPO-202ENST00000394243 CD99L2Q8TCZ2 262 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 TEX37Q96LM6 180 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 SCPEP1Q9HB40 452 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 LTB4R2Q9NPC1 389 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 OR52A1Q9UKL2 312 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 LPLP06858 475 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 MGMTP16455 207 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 RFX2P48378 723 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 ELAVL3Q14576 367 aaKnown RBP10.97□□□□□ -0.65
SYNPO-202ENST00000394243 FAAP20Q6NZ36 180 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 LIPIQ6XZB0 460 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 UBAC2Q8NBM4 344 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 SLC24A4Q8NFF2 622 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 GPR119Q8TDV5 335 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 ADOQ96SZ5 270 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 LOC102724200A0A096LPH7 203 aaPredicted RBP10.97□□□□□ -0.65
SYNPO-202ENST00000394243 HSD17B6O14756 317 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 TIMP2P16035 220 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 FCGR2CP31995 323 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 RANP62826 216 aaKnown RBP10.97□□□□□ -0.65
SYNPO-202ENST00000394243 SLC22A24Q8N4F4 322 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 VN1R3Q9BXE9 311 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 FAM234AQ9H0X4 552 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 HIPK2Q9H2X6 1198 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 NXT1Q9UKK6 140 aaKnown RBP10.97□□□□□ -0.65
SYNPO-202ENST00000394243 GPR34Q9UPC5 381 aa10.97□□□□□ -0.65
SYNPO-202ENST00000394243 GLAP06280 429 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 F2RL1P55085 397 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 KCNJ10P78508 379 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 POU3F1Q03052 451 aaPredicted RBP10.96□□□□□ -0.65
SYNPO-202ENST00000394243 TRIM61Q5EBN2 209 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 OR13C8Q8NGS7 320 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 ATF6BQ99941 703 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 TRAPPC2LQ9UL33 140 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 MOKQ9UQ07 419 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 FITM1A5D6W6 292 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 MCRIP1C9JLW8 97 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 P2RY10O00398 339 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 DDAH2O95865 285 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 PSMB6P28072 239 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 SLC19A1P41440 591 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 PMPCAQ10713 525 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 CATR1Q13166 79 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 CNKSR3Q6P9H4 555 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 CLEC14AQ86T13 490 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 RBMXL3Q8N7X1 1067 aaKnown RBP10.96□□□□□ -0.65
SYNPO-202ENST00000394243 HRASLSQ9HDD0 168 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 MRC1P22897 1456 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 TMEM11P17152 192 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 CSF2RBP32927 897 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 PTTG1IPP53801 180 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 KIAA0895LQ68EN5 471 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 OR5L1Q8NGL2 311 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 OR4A16Q8NH70 328 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 TMEM255BQ8WV15 326 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 LIPHQ8WWY8 451 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 AKR1E2Q96JD6 320 aa10.96□□□□□ -0.65
SYNPO-202ENST00000394243 PFKMP08237 780 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 HSF1Q00613 529 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 LGI3Q8N145 548 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 OR13D1Q8NGV5 346 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 FGGYQ96C11 551 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 PGAP3Q96FM1 320 aaPredicted RBP10.96□□□□□ -0.66
SYNPO-202ENST00000394243 LRFN5Q96NI6 719 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 OR51I2Q9H344 312 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 CHST11Q9NPF2 352 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 ISYNA1Q9NPH2 558 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 MYOTQ9UBF9 498 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 ZNF93P35789 620 aaPredicted RBP10.96□□□□□ -0.66
SYNPO-202ENST00000394243 ECI1P42126 302 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 TRA2BP62995 288 aaKnown RBP10.96□□□□□ -0.66
SYNPO-202ENST00000394243 IKZF1Q13422 519 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 KLHDC1Q8N7A1 406 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 OR4F5Q8NH21 305 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 OR4F4Q96R69 305 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 ROBO1Q9Y6N7 1651 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 IGHG1P01857 330 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 MMP2P08253 660 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 AOAHP28039 575 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 RAB13P51153 203 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 FXNQ16595 210 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 OR5M10Q6IEU7 315 aa10.96□□□□□ -0.66
SYNPO-202ENST00000394243 B3GNT9Q6UX72 402 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms