RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 RXFP3Q9NSD7 469 aa12.48□□□□□ -0.41
USP49-201ENST00000373006 PRUNE2Q8WUY3 3088 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 A0A1W2PP55 124 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 XRCC3O43542 346 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 CDKN2AP42771 156 aaKnown RBP12.47□□□□□ -0.41
USP49-201ENST00000373006 DGAT2L6Q6ZPD8 337 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 BIVMQ86UB2 503 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 HHIPL1Q96JK4 782 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 ZNF75AQ96N20 296 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 ZNF426Q9BUY5 554 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 POFUT1Q9H488 388 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 PHPT1Q9NRX4 125 aaPredicted RBP12.47□□□□□ -0.41
USP49-201ENST00000373006 TBX21Q9UL17 535 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 H7C1C5 153 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 PGDP52209 483 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 LCN6P62502 163 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 RIPPLY1Q0D2K3 151 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 LRRTM1Q86UE6 522 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 PM20D2Q8IYS1 436 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 EIF4E3Q8N5X7 224 aaKnown RBP12.47□□□□□ -0.41
USP49-201ENST00000373006 NSMAFQ92636 917 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 C3orf49Q96BT1 292 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 DNAJA3Q96EY1 480 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 HDAC8Q9BY41 377 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 TMEM231Q9H6L2 316 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 C14orf105Q9NVL8 296 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 DNAJB12Q9NXW2 375 aaKnown RBP12.47□□□□□ -0.41
USP49-201ENST00000373006 MRM2Q9UI43 246 aaKnown RBP12.47□□□□□ -0.41
USP49-201ENST00000373006 FBXO4Q9UKT5 387 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 SLC22A7Q9Y694 548 aa12.47□□□□□ -0.41
USP49-201ENST00000373006 TRAV14DV4A0A0A6YYC5 116 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 CD1AP06126 327 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 LIPCP11150 499 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 LUMP51884 338 aaPredicted RBP12.46□□□□□ -0.41
USP49-201ENST00000373006 AGBL4Q5VU57 503 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 RNF44Q7L0R7 432 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 NDUFAF7Q7L592 441 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 TMEM185AQ8NFB2 350 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 OR6N1Q8NGY5 312 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 SEC22AQ96IW7 307 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 SERINC2Q96SA4 455 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 MKKSQ9NPJ1 570 aaPredicted RBP12.46□□□□□ -0.41
USP49-201ENST00000373006 TRIOO75962 3097 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 GGT3PA6NGU5 568 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 SNAPC5O75971 98 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 AQP8O94778 261 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 IGKV1D-16P01601 117 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 S100A9P06702 114 aaKnown RBP12.46□□□□□ -0.41
USP49-201ENST00000373006 RPS15AP62244 130 aaKnown RBP12.46□□□□□ -0.41
USP49-201ENST00000373006 HTRA4P83105 476 aaPredicted RBP12.46□□□□□ -0.41
USP49-201ENST00000373006 ALKBH1Q13686 389 aaKnown RBP12.46□□□□□ -0.41
USP49-201ENST00000373006 LINC01590Q5TEZ4 76 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 C10orf53Q8N6V4 93 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 ZNF676Q8N7Q3 588 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 OR52R1Q8NGF1 315 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 OR10G6Q8NH81 332 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 LMAN2LQ9H0V9 348 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 APMAPQ9HDC9 416 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 TBC1D29Q9UFV1 150 aa12.46□□□□□ -0.41
USP49-201ENST00000373006 CDV3Q9UKY7 258 aaKnown RBP12.46□□□□□ -0.41
USP49-201ENST00000373006 NOSIPQ9Y314 301 aaKnown RBP12.46□□□□□ -0.41
USP49-201ENST00000373006 DCTN6O00399 190 aa12.46□□□□□ -0.42
USP49-201ENST00000373006 UPK3AO75631 287 aa12.46□□□□□ -0.42
USP49-201ENST00000373006 CTAG2O75638 210 aa12.46□□□□□ -0.42
USP49-201ENST00000373006 LY86O95711 162 aa12.46□□□□□ -0.42
USP49-201ENST00000373006 GPANK1O95872 356 aa12.46□□□□□ -0.42
USP49-201ENST00000373006 RPA2P15927 270 aa12.46□□□□□ -0.42
USP49-201ENST00000373006 PRICKLE4Q2TBC4 344 aa12.46□□□□□ -0.42
USP49-201ENST00000373006 FAM220AQ7Z4H9 259 aa12.46□□□□□ -0.42
USP49-201ENST00000373006 RAB7BQ96AH8 199 aa12.46□□□□□ -0.42
USP49-201ENST00000373006 OR2A5Q96R48 311 aa12.46□□□□□ -0.42
USP49-201ENST00000373006 TRIM2Q9C040 744 aa12.46□□□□□ -0.42
USP49-201ENST00000373006 ZMAT3Q9HA38 289 aaKnown RBP12.46□□□□□ -0.42
USP49-201ENST00000373006 STARD5Q9NSY2 213 aa12.46□□□□□ -0.42
USP49-201ENST00000373006 RFPL4AA6NLU0 287 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 RFPL4AL1F8VTS6 287 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 M0QYG6 137 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 CCSO14618 274 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 PRKNO60260 465 aaPredicted RBP12.45□□□□□ -0.42
USP49-201ENST00000373006 CSF1P09603 554 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 AKAIN1P0CW23 69 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 SPP1P10451 314 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 AQP2P41181 271 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 SNRPEP62304 92 aaKnown RBP12.45□□□□□ -0.42
USP49-201ENST00000373006 TAF13Q15543 124 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 ZNF684Q5T5D7 378 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 ULK3Q6PHR2 472 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 KRT77Q7Z794 578 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 MCATQ8IVS2 390 aaKnown RBP12.45□□□□□ -0.42
USP49-201ENST00000373006 BEST3Q8N1M1 668 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 CCDC74AQ96AQ1 378 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 MRPL48Q96GC5 212 aaKnown RBP12.45□□□□□ -0.42
USP49-201ENST00000373006 MYADMQ96S97 322 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 PTDSS2Q9BVG9 487 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 SLC25A32Q9H2D1 315 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 SRMSQ9H3Y6 488 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 MYEF2Q9P2K5 600 aaKnown RBP12.45□□□□□ -0.42
USP49-201ENST00000373006 ZNF337Q9Y3M9 751 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 POM121BA6NF01 834 aa12.45□□□□□ -0.42
USP49-201ENST00000373006 KCNAB3O43448 404 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms