RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TRAV18A0A075B6X5 111 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 OR4C45A6NMZ5 311 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 PRKNO60260 465 aaPredicted RBP14.89□□□□□ -0.03
SDC4-201ENST00000372733 GPANK1O95872 356 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 F13BP05160 661 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 CSF1P09603 554 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 SLC35E2P0CK97 266 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 PPP1CAP62136 330 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 ENPP2Q13822 863 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 C4orf46Q504U0 113 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 HSD17B13Q7Z5P4 300 aaPredicted RBP14.89□□□□□ -0.03
SDC4-201ENST00000372733 SFTPA2Q8IWL1 248 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 OR9A4Q8NGU2 314 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 OR2G2Q8NGZ5 317 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 VSTM2LQ96N03 204 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 MFFQ9GZY8 342 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 TRBV5-7A0A0A0MS05 114 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 SMAD9O15198 467 aaKnown RBP14.89□□□□□ -0.03
SDC4-201ENST00000372733 SDC3O75056 442 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 CD3DP04234 171 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 APODP05090 189 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 TPMTP51580 245 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 NKAIN2Q5VXU1 208 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 FAM122BQ7Z309 247 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 OR6N2Q8NGY6 317 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 MRPS24Q96EL2 167 aaKnown RBP14.89□□□□□ -0.03
SDC4-201ENST00000372733 GPX7Q96SL4 187 aaPredicted RBP14.89□□□□□ -0.03
SDC4-201ENST00000372733 EXO5Q9H790 373 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 APMAPQ9HDC9 416 aa14.89□□□□□ -0.03
SDC4-201ENST00000372733 OR2W5A6NFC9 320 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 ZNF254O75437 659 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 AKR7A3O95154 331 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 CTXN1P60606 82 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 PRPS1P60891 318 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 ISXQ2M1V0 245 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 LRFN4Q6PJG9 635 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 LRRC69Q6ZNQ3 347 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 CDC20BQ86Y33 519 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 ZNF595Q8IYB9 648 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 PLA2G2FQ9BZM2 168 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 LAMP5Q9UJQ1 280 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 A6NCN8 305 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 SERINC4A6NH21 518 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 EFCAB7A8K855 629 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 D6RAR5 112 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 SNAPC5O75971 98 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 APOC3P02656 99 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 CD14P08571 375 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 MPGP29372 298 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 POU3F4P49335 361 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 RAB38P57729 211 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 ITPRIPL2Q3MIP1 535 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 FAM74A1Q5RGS3 127 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 ANKRD16Q6P6B7 361 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 DPY19L4Q7Z388 723 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 PRSS35Q8N3Z0 413 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 BAHD1Q8TBE0 780 aaPredicted RBP14.88□□□□□ -0.03
SDC4-201ENST00000372733 WDR76Q9H967 626 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 CACNA1CQ13936 2221 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 C2orf16Q68DN1 1984 aa14.88□□□□□ -0.03
SDC4-201ENST00000372733 ARHGEF17Q96PE2 2063 aaPredicted RBP14.87□□□□□ -0.03
SDC4-201ENST00000372733 AKAIN1P0CW23 69 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 GRK6P43250 576 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 CCR4P51679 360 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 SLC25A1P53007 311 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 DMWDQ09019 674 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 ETFDHQ16134 617 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 ALG10Q5BKT4 473 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 KRT77Q7Z794 578 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 ATOH1Q92858 354 aaPredicted RBP14.87□□□□□ -0.03
SDC4-201ENST00000372733 LMF1Q96S06 567 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 AMELYQ99218 206 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 TRAV14DV4A0A0A6YYC5 116 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 ELOA3DA6NLF2 546 aaPredicted RBP14.87□□□□□ -0.03
SDC4-201ENST00000372733 OIP5O43482 229 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 RAD1O60671 282 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 AQP8O94778 261 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 ITGA5P08648 1049 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 ATXN8OSP0DMR3 200 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 IL32P24001 234 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 CSF2RBP32927 897 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 GMFBP60983 142 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 ELOA3BQ3SY89 546 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 C17orf107Q6ZR85 190 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.87□□□□□ -0.03
SDC4-201ENST00000372733 ZNF761Q86XN6 746 aaPredicted RBP14.87□□□□□ -0.03
SDC4-201ENST00000372733 ELOA3Q8NG57 546 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 ZNF417Q8TAU3 575 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 PAWRQ96IZ0 340 aaKnown RBP14.87□□□□□ -0.03
SDC4-201ENST00000372733 GAL3ST1Q99999 423 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 CCDC3Q9BQI4 270 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 COMMD4Q9H0A8 199 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 POFUT1Q9H488 388 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 TAS2R8Q9NYW2 309 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 GLS2Q9UI32 602 aa14.87□□□□□ -0.03
SDC4-201ENST00000372733 ZNF230Q9UIE0 474 aaPredicted RBP14.87□□□□□ -0.03
SDC4-201ENST00000372733 CDV3Q9UKY7 258 aaKnown RBP14.87□□□□□ -0.03
SDC4-201ENST00000372733 LINC01553A4QN01 128 aa14.86□□□□□ -0.03
SDC4-201ENST00000372733 HPP00738 406 aa14.86□□□□□ -0.03
SDC4-201ENST00000372733 RPA2P15927 270 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms