RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 KLHL17Q6TDP4 642 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 MEX3DQ86XN8 651 aaKnown RBP13.82□□□□□ -0.2
CLN3-201ENST00000333496 PIAS4Q8N2W9 510 aaPredicted RBP13.82□□□□□ -0.2
CLN3-201ENST00000333496 OR6X1Q8NH79 312 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 MOSPD2Q8NHP6 518 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 FBXW5Q969U6 566 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 NMNAT1Q9HAN9 279 aaPredicted RBP13.82□□□□□ -0.2
CLN3-201ENST00000333496 NDUFAF4Q9P032 175 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 SAMD4AQ9UPU9 718 aaKnown RBP13.82□□□□□ -0.2
CLN3-201ENST00000333496 POMPQ9Y244 141 aa13.82□□□□□ -0.2
CLN3-201ENST00000333496 ARPC4-TTLL3A0A0A6YYG9 625 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 ZNF503-AS2A6NEH8 195 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 A6NHS1 94 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 ZNF99A8MXY4 864 aaPredicted RBP13.81□□□□□ -0.2
CLN3-201ENST00000333496 ARPC2O15144 300 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 SEC14L2O76054 403 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 WNT11O96014 354 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 SEMG1P04279 462 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 IFI30P13284 250 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 MAKP20794 623 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 TUBA1BP68363 451 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 TUBA4AP68366 448 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 PRKCDQ05655 676 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 LAPTM4AQ15012 233 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 PGGHGQ32M88 737 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 TBPL2Q6SJ96 375 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 KLHL24Q6TFL4 600 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 TUBA1AQ71U36 451 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 NRMQ8IXM6 262 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 ACOT11Q8WXI4 607 aaPredicted RBP13.81□□□□□ -0.2
CLN3-201ENST00000333496 TMEM54Q969K7 222 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 BPIFA2Q96DR5 249 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 ADAD1Q96M93 576 aaKnown RBP13.81□□□□□ -0.2
CLN3-201ENST00000333496 S100A14Q9HCY8 104 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 OBP2BQ9NPH6 170 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 CISD1Q9NZ45 108 aaKnown RBP13.81□□□□□ -0.2
CLN3-201ENST00000333496 MAGEL2Q9UJ55 1249 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 LAMP3Q9UQV4 416 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 MAGED1Q9Y5V3 778 aaPredicted RBP13.81□□□□□ -0.2
CLN3-201ENST00000333496 V9GYQ6 96 aa13.81□□□□□ -0.2
CLN3-201ENST00000333496 GMNNO75496 209 aa13.8□□□□□ -0.2
CLN3-201ENST00000333496 SOD3P08294 240 aa13.8□□□□□ -0.2
CLN3-201ENST00000333496 RUNX1T1Q06455 604 aa13.8□□□□□ -0.2
CLN3-201ENST00000333496 FHL1Q13642 323 aa13.8□□□□□ -0.2
CLN3-201ENST00000333496 OR6N1Q8NGY5 312 aa13.8□□□□□ -0.2
CLN3-201ENST00000333496 SLC25A44Q96H78 314 aaPredicted RBP13.8□□□□□ -0.2
CLN3-201ENST00000333496 PYURFQ96I23 114 aa13.8□□□□□ -0.2
CLN3-201ENST00000333496 MGAT4BQ9UQ53 548 aa13.8□□□□□ -0.2
CLN3-201ENST00000333496 HIF3AQ9Y2N7 669 aa13.8□□□□□ -0.2
CLN3-201ENST00000333496 IGHV1-18A0A0C4DH31 117 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 HTR3EA5X5Y0 456 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 E7EQL1 145 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 hCG_2039718K7EN88 272 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 DIRAS1O95057 198 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 BCL10O95999 233 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 PGA4P0DJD7 388 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 PGA3P0DJD8 388 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 HOXB1P14653 301 aaPredicted RBP13.79□□□□□ -0.2
CLN3-201ENST00000333496 RHCEP18577 417 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 CSNK1A1P48729 337 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 CDH11P55287 796 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 UBE2NP61088 152 aaKnown RBP13.79□□□□□ -0.2
CLN3-201ENST00000333496 RPS4XP62701 263 aaKnown RBP13.79□□□□□ -0.2
CLN3-201ENST00000333496 SPATS1Q496A3 300 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 SLC22A25Q6T423 547 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 B3GLCTQ6Y288 498 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 ZNF627Q7L945 461 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 RNF113BQ8IZP6 322 aaKnown RBP13.79□□□□□ -0.2
CLN3-201ENST00000333496 SLC7A13Q8TCU3 470 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 SMAP2Q8WU79 429 aaPredicted RBP13.79□□□□□ -0.2
CLN3-201ENST00000333496 ASB10Q8WXI3 467 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 RADILQ96JH8 1075 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 NSMCE2Q96MF7 247 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 NR1H4Q96RI1 486 aaPredicted RBP13.79□□□□□ -0.2
CLN3-201ENST00000333496 ULBP2Q9BZM5 246 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 ANKRD19PQ9H560 264 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 INIPQ9NRY2 104 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 GLTPQ9NZD2 209 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 CRNNQ9UBG3 495 aaPredicted RBP13.79□□□□□ -0.2
CLN3-201ENST00000333496 TEP1Q99973 2627 aaKnown RBP13.79□□□□□ -0.2
CLN3-201ENST00000333496 SMPD2O60906 423 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 NKX6-1P78426 367 aaPredicted RBP13.79□□□□□ -0.2
CLN3-201ENST00000333496 LRFN4Q6PJG9 635 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 ZNF730Q6ZMV8 503 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 MBOAT2Q6ZWT7 520 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 MYPOPQ86VE0 399 aaPredicted RBP13.79□□□□□ -0.2
CLN3-201ENST00000333496 CYP4Z1Q86W10 505 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 TGIF2LYQ8IUE0 185 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 LRRC75A-AS1Q8N1F1 130 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 WFDC11Q8NEX6 87 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 TMEM171Q8WVE6 324 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 ZNF566Q969W8 418 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 ASB9Q96DX5 294 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 MRPL13Q9BYD1 178 aaKnown RBP13.79□□□□□ -0.2
CLN3-201ENST00000333496 SEC61A2Q9H9S3 476 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 B3GAT2Q9NPZ5 323 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 SCOCQ9UIL1 159 aa13.79□□□□□ -0.2
CLN3-201ENST00000333496 ARFGEF3Q5TH69 2177 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 TRAV27A0A087WT01 109 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 A0A1W2PRG6 482 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms